1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGACGGAAGCGGAAATCCGGATGCTTTGCGTGACGTCGAAGGAGATCTTCCTAAGCCAGCCGAATCTTCTTGAGCTTGAAGCGCCGATAAAGATTTGTGgtaaaatcattatggaaaatgacggtgttgatttaattcccttttttggtttgtaaaataatcgtttggttttgttttgtttttttcttgaatcatccct...
species | Vitis vinifera |
transcript | Vv02s0025g00480.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTAAGCCAGCCGAATCTTCTTGAGCTTGAAGCGCCGATAAAGATTTGTG GAGATGTTCATGGTCAGTTTTCTGATCTTCTAAGATTGTTTGAGTACGGTGEST: gi|34545472|gb|CF513704.1|CF513704
genomic: CCTAAGCCAGCCGAATCTTCTTGAGCTTGAAGCGCCGATAAAGATTTGTGgtaaaatcat ... tgcattacagGAGATGTTCATGGTCAGTTTTCTGATCTTCTAAGATTGTTTGAGTACGGTG
EST: CCTAAGCCAGCCGAATCTTCTTGAGCTTGAAGCGCCGATAAAGATTTGTG GAGATGTTCATGGTCAGTTTTCTGATCTTCTAAGATTGTTTGAGTACGGTG
genomic: CCTAAGCCAGCCGAATCTTCTTGAGCTTGAAGCGCCGATAAAGATTTGTGgtaaaatcat ... tgcattacagGAGATGTTCATGGTCAGTTTTCTGATCTTCTAAGATTGTTTGAGTACGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGACGGAAGCGGAAATCCGGATGCTTTGCGTGACGTCGAAGGAGATCTTCCTAAGCCAGCCGAATCTTCTTGAGCTTGAAGCGCCGATAAAGATTTGTGgtaaaatcattatggaaaatgacggtgttgatttaattcccttttttggtttgtaaaataatcgtttggttttgttttgtttttttcttgaatcatccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa