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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGATACACTTATCTTGTTGCTGCTATGATGTCTAGCCTCGGCATCACTTCAATGGCTATCGTTGCTGTCTACTACAGATTTTCTTGGCAAATGGAGgtgcttcttttttctcacctcattcgatttaccgttcggagttgtttgttttagtttcttttttatttttttcttgaacttggtttccattacttgccatggacag

Basic information

species Vitis vinifera
transcript Vv02s0025g00240.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26258277|gb|CA809340.1|CA809340
EST:     CTTCAATGGCTATCGTTGCTGTCTACTACAGATTTTCTTGGCAAATGGAG                         GGTGGAGAAATCCCAGTTCTGGAAATGTTGGGTACATTTGCTCTTTCTGTG
genomic: CTTCAATGGCTATCGTTGCTGTCTACTACAGATTTTCTTGGCAAATGGAGgtgcttcttt ... ccatggacagGGTGGAGAAATCCCAGTTCTGGAAATGTTGGGTACATTTGCTCTTTCTGTG
EST: gi|26257470|gb|CA808533.1|CA808533
EST:     CTTCAATGGCTATCGTTGCTGTCTACTACAGATTTTCTTGGCAAATGGAG                         GGTGGAGAAATCCCAGTTCTGGAAATGTTGGGTACATTTGCTCTTTCTGTG
genomic: CTTCAATGGCTATCGTTGCTGTCTACTACAGATTTTCTTGGCAAATGGAGgtgcttcttt ... ccatggacagGGTGGAGAAATCCCAGTTCTGGAAATGTTGGGTACATTTGCTCTTTCTGTG
EST: gi|294964011|gb|GW836886.1|GW836886
EST:     CTTCAATGGCTATCGTTGCTGTCTACTACAGATTTTCTTGGCAAATGGAG                         GGTGGAGAAATCCCAGTTCTGGAAATGTTGGGTACATTTGCTCTTTCTGTG
genomic: CTTCAATGGCTATCGTTGCTGTCTACTACAGATTTTCTTGGCAAATGGAGgtgcttcttt ... ccatggacagGGTGGAGAAATCCCAGTTCTGGAAATGTTGGGTACATTTGCTCTTTCTGTG