1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCTCTTTGGGTCGCCTCCCCATCTCAGACCCGGCCCAAGCTCTCAGGCCTCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaacgaatgaatacgattccatttttattgcaagatcgctcctcattctccctgtttgcttgctgacaaaacttaagtcagatggctataatga...
species | Vitis vinifera |
transcript | Vv02s0012g01580.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAG AGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGGEST: gi|30305815|gb|CB982609.1|CB982609
genomic: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaac ... gaaatttcagAGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGG
EST: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAG AGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGGEST: gi|110366835|gb|EC930753.1|EC930753
genomic: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaac ... gaaatttcagAGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGG
EST: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAG AGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGGEST: gi|110401057|gb|EC967650.1|EC967650
genomic: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaac ... gaaatttcagAGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGG
EST: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAG AGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGGEST: gi|32457411|gb|CD798585.1|CD798585
genomic: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaac ... gaaatttcagAGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGG
EST: TCACCAGCCCCAAACCCAGAGAGAAG AGTGAAGAATTGAAACTACACGGTTGAGGAAGCTTGCGGACATGGCAGAGAEST: gi|110414360|gb|EC980187.1|EC980187
genomic: TCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaac ... gaaatttcagAGTGAAGAATTGAAACT--ACGGTTGAGGAAGCTTGCGGACATGGCAGAGA
EST: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAG AGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGGEST: gi|30305753|gb|CB982547.1|CB982547
genomic: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaac ... gaaatttcagAGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGG
EST: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAG AGTGAAGAATTGAAACTACGGCTGAGGAAGCTTGCGGACATGGCAGAGAGGEST: gi|110382854|gb|EC947178.1|EC947178
genomic: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaac ... gaaatttcagAGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGG
EST: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAG AGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGG
genomic: TCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaac ... gaaatttcagAGTGAAGAATTGAAACTACGGTTGAGGAAGCTTGCGGACATGGCAGAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCTTTGGGTCGCCTCCCCATCTCAGACCCGGCCCAAGCTCTCAGGCCTCCTCTATGGATCCCAATTCATCTTCACCAGCCCCAAACCCAGAGAGAAGgtaaaccaacgaatgaatacgattccatttttattgcaagatcgctcctcattctccctgtttgcttgctgacaaaacttaagtcagatggctataatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaa