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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGTGTGTAATGGACGCCTCCAGCACCCTCGGCTCCACTCTCGTCGGCAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccctaccctcttaatttaccgttaattcatctggaagaaattggagtacttaattgttttttttggtttgtatttgatgagcag

Basic information

species Vitis vinifera
transcript Vv02s0012g01570.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351012958|gb|FQ433685.1|FQ433685
EST:     CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351022252|gb|FQ438837.1|FQ438837
EST:     CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|349827254|gb|FQ421527.1|FQ421527
EST:     CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351054929|gb|FQ440268.1|FQ440268
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|349824192|gb|FQ417579.1|FQ417579
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|110698373|gb|EE075806.1|EE075806
EST:     CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351032374|gb|FQ461627.1|FQ461627
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|110698334|gb|EE075732.1|EE075732
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|161716563|gb|FC065241.1|FC065241
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGCAG                       
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCAT---Ggtcgcttccc ... tgatgagc
EST: gi|349829527|gb|FQ420059.1|FQ420059
EST:     CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351052898|gb|FQ453885.1|FQ453885
EST:     CAGGCTTCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|110358947|gb|EC919627.1|EC919627
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351032105|gb|FQ460362.1|FQ460362
EST:     CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351043157|gb|FQ451330.1|FQ451330
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|33403446|gb|CF209073.1|CF209073
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|352793805|gb|FQ481959.1|FQ481959
EST:     CAGGCTTCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351033475|gb|FQ462126.1|FQ462126
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|30256399|gb|CB972242.1|CB972242
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351046516|gb|FQ453132.1|FQ453132
EST:     CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTCGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351045768|gb|FQ440953.1|FQ440953
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351044687|gb|FQ443218.1|FQ443218
EST:     CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351055186|gb|FQ440525.1|FQ440525
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351047023|gb|FQ454633.1|FQ454633
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351048704|gb|FQ448978.1|FQ448978
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351035400|gb|FQ459667.1|FQ459667
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351033662|gb|FQ462192.1|FQ462192
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|110356771|gb|EC919842.1|EC919842
EST:     CAGGCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
EST: gi|351012956|gb|FQ433683.1|FQ433683
EST:     CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATG                         GTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA
genomic: CAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccc ... tgatgagcagGTGAAATTCAACTGTTGAATGGGCTTTCTTGTGATACCCAGAAGCTGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGTGTGTGTAATGGACGCCTCCAGCACCCTCGGCTCCACTCTCGTCGGCAGCCTCCTCCTAAGAGGCTATACGGTCCATGCTGCGGTCCAAAACCATGgtcgcttccctaccctcttaatttaccgttaattcatctggaagaaattggagtacttaattgttttttttggtttgtatttgatgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC