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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGTACAGTGCTCCGCCGCCTCCGGCATTTTCCAGGACCGTCAACAGTGGGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatgagtaatctggtggttcatattgtgattaagttcgaatttagtgaatgaggctggtaattttgcttgcaatgcggattctagttttggcgg...

Basic information

species Vitis vinifera
transcript Vv01s0244g00070.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031196|gb|FQ445023.1|FQ445023
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|349814198|gb|FQ414817.1|FQ414817
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351022412|gb|FQ445187.1|FQ445187
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351046750|gb|FQ454360.1|FQ454360
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|71864186|gb|DT013241.1|DT013241
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTT
EST: gi|352798824|gb|FQ478459.1|FQ478459
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|352768718|gb|FQ467930.1|FQ467930
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351032600|gb|FQ458965.1|FQ458965
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCCTCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351012981|gb|FQ433708.1|FQ433708
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351024338|gb|FQ423761.1|FQ423761
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351052036|gb|FQ455329.1|FQ455329
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351037721|gb|FQ464162.1|FQ464162
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351030666|gb|FQ438504.1|FQ438504
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351036830|gb|FQ459352.1|FQ459352
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351031918|gb|FQ460175.1|FQ460175
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|349821835|gb|FQ412990.1|FQ412990
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351037441|gb|FQ460640.1|FQ460640
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351026953|gb|FQ436606.1|FQ436606
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351047980|gb|FQ441152.1|FQ441152
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|161717169|gb|FC066567.1|FC066567
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351052469|gb|FQ452502.1|FQ452502
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
EST: gi|351055097|gb|FQ440436.1|FQ440436
EST:     GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGG                         TTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT
genomic: GGAAACCTGCTGTGCCGGCGAGTAGAGTCACTAGATCTCCTTCTCCTGGGgtaagttatg ... ttttaattagTTAGGTCGGAACTTTGTAGAGGAAACTCCATCAGTGCGCTCAACATCTGCT