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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCCGTTACTGCTACCACCGCAACTGCCTCGATCTCTTTTCCTCTTCACATGGATTCAGCCGCTTCTCGTCCCGCCGTGGTCATCGACAACGGCACCGGgtaatttcaaatttgcatgccaactggtcgatgaaatgccggattgatttttccctaatttttatccattattgcag

Basic information

species Vitis vinifera
transcript Vv01s0137g00280.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g38340.1 (Oryza sativa), 5'ss of exon 1
-GGTCCGTT-ACTGCTACCACCGCAACTGCCTCGATCTCTTTTCCTCTTCAC-ATGGATTCAGCCGCTTCTCGTCCCGCCGTGGTCATCGACAACGGCACCGGgtaatttcaaatttgcatgccaactggtcgatgaaatgccggattgatttttcc----ctaatttttatccattattgcag---------------------
 ||     | || |    | ||||  | |    |          | |  | | |||||    ||||| || || |||||||| ||||||||||||||||||||||||       | |   |  |   |    |||       ||||  |  |   ||    | ||| |    |   |  ||                        
TGGCTGACTGACCGACTGCGCCGCCGCGGTGCGGTGGGACCACGCGCGACGCCATGGAC---GCCGCCTCCCGCCCCGCCGTCGTCATCGACAACGGCACCGGgtaagcctccctctctctctctctttccagatctgcgcgcggagagcgtgcgccgcggcgaatctgaggcgggtgatgagaatgggtggcgcgcgcgcgcag

upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g03440.1 (Oryza sativa), 5'ss of exon 1
GGTCCGTTACTGCTACCACCGCAACTGCCTCGATCTCTTTTCCTCTTCACATGGATTCA-GCCGCTTCTCGTCCCGCCGTGGTCATCGACAACGGCACCGGgtaa---------tttcaaatttgcatgccaactggtcgatgaaatgccggattg-atttttccctaatttttatccattattgcag--------------
 | | ||  | |        ||    |||  |       |    ||  |    |||  | |||||  | || |||||||| ||||||||||||||||| ||||||         |      || |  ||     | ||        |  ||  |||   | | | |   || ||| |  |   |||                
-GGCGGTGGCGGAGGAGGAGGCGTGAGCCGAGGGGGAACTGGAGCTCGAGCGAGATGGATGCCGCCACGCGCCCCGCCGTCGTCATCGACAACGGCACAGGgtaaggcggttgttggttggttcgtttgtttgtttgtttgccccctctcgcgttgtgctctcctccggttgttagct-tcgctgcgtgatccgtgcgcggc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294967135|gb|GW840010.1|GW840010
EST:     ATGGATTCAGCCGCTTCTCGTCCCGCCGTGGTCATCGACAACGGCACCGG                         GTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCC
genomic: ATGGATTCAGCCGCTTCTCGTCCCGCCGTGGTCATCGACAACGGCACCGGgtaatttcaa ... attattgcagGTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCC