1 5' 3' | 2 5' 3' |
ATGAAGCTTCAAATCAAGGTCGATGATCAAACCGGAAAGATCGTCGATGCTTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTGgtccgtatttatttatttatttttcttttttcttacgtgaaatcaaaatgaaataaaggaaattgggattttctgaattatacaaccggttcccttaatt...
species | Vitis vinifera |
transcript | Vv01s0127g00450.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTG CCACGGAATGGGTGAAAGGCAAGCAAACGGAGGAAGTTCTATCCATEST: gi|352782485|gb|FQ470388.1|FQ470388
genomic: TTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTGgtccgtattt ... tcacttccagCCACGGAATGGGTGAAAGGCAAGCAAACGGAGGAAGTTCTATCCAT
EST: TTGCTTCAAGACCTTTGGTTGTGGATCCGCGATCGCCTCTTCCTCTGTTG CCACGGAATGGGTGAAAGGCAAGCAAACAAAGGAAGTTCTATCCATAAAAA
genomic: TTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTGgtccgtattt ... tcacttccagCCACGGAATGGGTGAAAGGCAAGCAAACGGAGGAAGTTCTATCCATAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAAGCTTCAAATCAAGGTCGATGATCAAACCGGAAAGATCGTCGATGCTTGCTTCAAGACCTTTGGTTGTGGATCCGCCATCGCCTCTTCCTCTGTTGgtccgtatttatttatttatttttcttttttcttacgtgaaatcaaaatgaaataaaggaaattgggattttctgaattatacaaccggttcccttaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaatt