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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAAGAGAGAGCTCGAAGATGGTGCAACGTCTTACCTATCGCAAGCGGCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcaccatttgatgtgaaagagatttttttttttttggtacagatttatatcattctgcgtgtatagttatgagattcgatccatgacttggtctatgtgtttgttgtttaatgttggaatttag

Basic information

species Vitis vinifera
transcript Vv01s0026g02410.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 1
AGAGGAAGAGAGAGCTCGAAGATGGTGCAACGTCTTACCTATCGCAAGCGGCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcaccatttgatgtgaaagagatttttttttttttggtacagatttatatcattctgcgtgtatagttatgagattcgatccatgacttggtctatgtgtttgttgtttaatgttggaatttag
 | ||  | |   |     |||||||||| || || ||||| || ||||| |||||||| || |||||||| ||||||  |||||||||||| ||||||||| |     || ||     |  ||||  ||| || ||   ||||   | ||  |    |  |||   | | || ||| | || |     ||  ||| | | ||                           
CGCGGCGGCGGCGGTGGCGAGATGGTGCAGCGGCTCACCTACCGGAAGCGTCACAGCTACGCGACTAAGTCGAACCAGACCAGGGTCGTCAAGACCCCAGgt-acggatccgttcttgcttgaagaattttcttgttgcctggtgtggtttcttgatctgttgcagattt-gtgatgtgtttgg--tggtggattgttgt-tgcag------------------------

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g06040.1 (Oryza sativa), 5'ss of exon 1
-AGAGGAAGAGAGAGCTCGAAGATGGTGCAACGTCTTACCTATCGCAAGCGGCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcaccatttgatgtgaaagagatttttttttttttggtacagatttatatcattctgcgtgtatagttatgagattcgatccatgacttggtctatgtgtttgttgtttaatgttggaatttag
  | || |||| | | |||||||||||||| || || ||||| || |||||||||||||| ||||| || |||||||||  | | |||||||| ||||| ||| | |     ||| |      |      ||| || || |||||    | |  | |  ||    ||  |  ||| |||     | |    ||||  ||  |  |||                        
CCGCGGGAGAGCGCG-TCGAAGATGGTGCAGCGGCTGACCTACCGGAAGCGGCACAGCTACGCCACGAAATCCAACCAGACCCGCGTCGTCAAGACCCCCGgtgagcgagaaattcgcctcttag-----tttcttgttcttggtggttaatcttttgttttcttgtaaaatgtt-tgattgatgcttagcgactgcgttgaaatgt------------------------

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G166963_T02 (Zea mays), 5'ss of exon 1
AGAGGAAGAGAGAGCTCGAAGATGGTGCAACGTCTTACCTATCGCAAGCGGCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcaccatttgatgtgaaagagatttttttttttttggtacagatttatatca-ttctgcgtgtatagttatgagattcgatccatgacttggtctatgtgtttgttgtttaatgttggaatttag
 | |   | ||  ||   ||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||    |||||||||| ||||| ||||       | |    |    |  |  || | || | |||  |    | || | |   |||      |||  |  |  || |   |   | |  || |  ||  ||||||| || |              
GGCGCGCGCGACGGCGGCAAGATGGTGCAGCGTCTGACCTACCGCAAGCGGCACAGCTATGCCACGAAGTCCAACCAGACGCGGGTCGTCAAGACCCCTGgtccggatctcctcgacttcctatcattttctcttctgtttccttttcacttttgttggttcctttgatatcttggtttgagtatgttttttatgtgctagattggtttgtttttcag-------------

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 1
AGAGGAAGAGAGAGCT-CGAAGATGGTGCAACGTCTTACCTATCGCAAGCGGCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcaccatttgatgtgaaagagatttttttttttttggtacagatttatatcattctgcgtgtatagttatgaga------ttcgatccatgacttggt----ctatgtgtttgttgtttaat---gttggaatttag---
 |||   ||   |    ||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||  | |  |   |     |  |||| |  ||    | | |   |||| | |  || |   ||| | ||| | | |      ||      || | |||||    ||  ||   | ||||||  |   || |||||   |   
-GAGCGTGATCCATTGACGAAGATGGTGCAGCGTCTCACCTACCGCAAGCGGCACAGCTATGCCACCAAGTCCAACCAACACAGGGTCGTCAAAACCCCTGgtaatcaaatccctccctc----actgattatgcttcggatcggaacaatttttgtttttgtttttgttttgttttaaaaaaaaagtttttggtattaattggttctgctgggtacgtcttgtttggttctgtgggaataatgcag

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G11920.1 (Glycine max), 5'ss of exon 1
AGAGGAAGAGAGAGCT-CGAAGATGGTGCAACGTCTTACCTATCGCAAGCGGCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatc---tcaccatttgatgtgaaagagatttttttttttt-tggtacagatttatatcattctgcgtgtatagttatgagattcgatccatgacttggtctatgtgtt-tgttgtttaatgttggaatttag---
 |||   ||   |    ||||||||||||| ||||| ||||| |||||| |||||||||||||||| || |||||||| |||||||||||||||||||| ||| |||   || |  || |         |     | ||   || || | |  ||    |  ||| |   | | || || || |  |  ||   |    ||     | |||| ||||   | |||| |||||   |   
-GAGCGTGATCCATTGACGAAGATGGTGCAGCGTCTCACCTACCGCAAGAGGCACAGCTATGCCACCAAATCCAACCAACACAGGGTCGTCAAAACCCCTGgtaatcaaatccctcttcggaacccctcactcactcttcgattatgcttcgaatcggaacaatttttgctttttaattttgggtattaattggt--tctgacgggtatgttgtgtttggtgatgtgggaataatgcag

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G41280.1 (Glycine max), 5'ss of exon 1
AGAGGAAGAGAGAGCTCGAAGATGGTGCAACGTCTTACCTATCGCAAGCGGCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcaccat-ttgatgtgaaagagat--ttttttttttttggt-acagatttatatcattctgcgtgtatagttatgagattcgatccatgacttggtctatgtgtttgttgtttaatgttggaatttag
 || ||||         |||||||||||| ||||| ||||| |||||||| |||||||||||||| || |||||||||||||| |||||||| || || ||| |    ||  | ||     |    | ||  |  ||| || |   | || |     | || || ||||      |    |||    | ||||  | |   | |   |||  | |   | ||  | ||||  ||
GGAAGAAGCTGATCGGAGAAGATGGTGCAGCGTCTCACCTACCGCAAGCGCCACAGCTATGCCACCAAATCCAACCAGCACAGAGTCGTCAAGACTCCCGgtaaataaactctcttcgctcgcctcacatcgtcgtttattctcactcacggcgcgttgtcgttttgcgcc----gccgcgagg---gctccaaaaatatattttaatgtgcggttgctgattgttgaatgcag

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G14980.1 (Glycine max), 5'ss of exon 1
AGAGGAAGAGAGAGCTCGAAGATGGTGCAACGTCTTACCTATCGCAAGCGGCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatc--tcaccatttgatgtgaaagagatttttttttttttggtacagatttatatcattctgcgtgtatagttatgagattcgatccatgacttggtctatgtgtttgttgtttaatgttggaatttag
 || ||||      |  |||||||||||| ||||| ||||| ||||| || ||||||||||| || || |||||||||||||| |||||||| || || ||| | |  ||  |  | | |  | |      ||| || |   |  |   |  |  | |    | ||| ||   ||| | | | | || |  | |  ||  |  || | | |||||| ||||  |        
GGAAGAAGCTGATCCGAGAAGATGGTGCAGCGTCTCACCTACCGCAAACGCCACAGCTATGCTACCAAATCCAACCAGCACAGAGTCGTCAAGACTCCCGgtaaactgtcttcgctcgcttcgcatcgtcgtttattctcactcatggcgtgtcgt-ttgcgccgcgagt---gttctaaaaataga-ctgtaatgtg--cggtg-gctggttgttgaatgcag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715774|gb|EE094207.1|EE094207
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|349827592|gb|FQ422460.1|FQ422460
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|27582239|gb|CB004934.1|CB004934
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|71871363|gb|DT020418.1|DT020418
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|110707256|gb|EE083500.1|EE083500
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|110695694|gb|EE074007.1|EE074007
EST:     CCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: CCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|110703427|gb|EE080263.1|EE080263
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|161716131|gb|FC066487.1|FC066487
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|110691194|gb|EE069016.1|EE069016
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|37187841|gb|CF607194.1|CF607194
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|30134974|gb|CB920312.1|CB920312
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|352785847|gb|FQ475850.1|FQ475850
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|110419706|gb|EC985955.1|EC985955
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|71875792|gb|DT024847.1|DT024847
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|71867822|gb|DT016877.1|DT016877
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|110400132|gb|EC966677.1|EC966677
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|71866217|gb|DT015272.1|DT015272
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|110732670|gb|EE108161.1|EE108161
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|349824962|gb|FQ406534.1|FQ406534
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|110365512|gb|EC928620.1|EC928620
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|71866026|gb|DT015081.1|DT015081
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|352789622|gb|FQ476220.1|FQ476220
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCCAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
EST: gi|110717929|gb|EE094214.1|EE094214
EST:     GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAG                         GTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT
genomic: GCACAGCTATGCCACTAAGTCCAACCAGCACAGGGTCGTCAAAACCCCAGgtcatctcac ... tggaatttagGTGGAAAGCTGGTGTATCAGAGCACCAAGAAGAGGGCAAACGGTCCTAAGT