Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAATTAGGGCTTCTGATCACCCGATCAGCGATGGCGATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagggattatccatttccatcatcacctcaattcttcgttcagtccagttctcatcttcttatctttgctttactttcttcctacag

Basic information

species Vitis vinifera
transcript Vv01s0026g01700.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125948|gb|CB911287.1|CB911287
EST:     GGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
genomic: GGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
EST: gi|110693432|gb|EE069656.1|EE069656
EST:     GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAACGGCAAATTGTCGGATATATTGG
genomic: GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
EST: gi|161717886|gb|FC065984.1|FC065984
EST:     GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAACGGCAAATTGTCGGATATATTGG
genomic: GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
EST: gi|30137104|gb|CB922442.1|CB922442
EST:     GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAACGGCAAATTGTCGGATATATTGG
genomic: GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
EST: gi|161718575|gb|FC069322.1|FC069322
EST:     GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAACGGCAAATTGTCGGATATATTGG
genomic: GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
EST: gi|161719703|gb|FC069425.1|FC069425
EST:     GTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAACGGCAAATTGTCGGATATATTGG
genomic: GTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
EST: gi|71857008|gb|DT006063.1|DT006063
EST:     GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAACGGCAAATTGTCGGATATATTGG
genomic: GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
EST: gi|110722964|gb|EE099738.1|EE099738
EST:     GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAACGGCAAATTGTCGGATATATTGG
genomic: GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
EST: gi|110713393|gb|EE089276.1|EE089276
EST:     GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAACGGCAAATTGTCGGATATATTGG
genomic: GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG
EST: gi|161720924|gb|FC070664.1|FC070664
EST:     GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAG                         GATACACCAGTACGATCTTGCTCAAGAACGGCAAATTGTCGGATATATTGG
genomic: GATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagg ... cttcctacagGATACACCAGTACGATCTTGCTCAAGAATGGCAAATTGTCGGATATATTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAAATTAGGGCTTCTGATCACCCGATCAGCGATGGCGATGCAAACTGGTGTAGGGGTTTCAAAGATCCTGATCCTGGTTGGAGCAGgtaattaagggattatccatttccatcatcacctcaattcttcgttcagtccagttctcatcttcttatctttgctttactttcttcctacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG