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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCTCAATACGAACAGCCTCAGGACTCCAACGCCGATGCTGGCTATGCCTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctgaaagatctgattgttttgtttctctttgatttgattcatagttttcatcgctgatttgattggtgatgtgatcag

Basic information

species Vitis vinifera
transcript Vv01s0026g01050.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349812747|gb|FQ409906.1|FQ409906
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|110366303|gb|EC930132.1|EC930132
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|18459099|gb|BM437377.1|BM437377
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349815627|gb|FQ400783.1|FQ400783
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351056670|gb|FQ443297.1|FQ443297
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351055345|gb|FQ441943.1|FQ441943
EST:     CTCCGATGGCGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349822290|gb|FQ412554.1|FQ412554
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|156735865|gb|EV239979.1|EV239979
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351032103|gb|FQ460360.1|FQ460360
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351052779|gb|FQ456506.1|FQ456506
EST:     CTCCGATGGCGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|161720326|gb|FC071179.1|FC071179
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349818411|gb|FQ409186.1|FQ409186
EST:     CTCCGATGACGTTGTTCCCGCCTCCGCCCGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|18459156|gb|BM437434.1|BM437434
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349809289|gb|FQ399063.1|FQ399063
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|110359399|gb|EC920819.1|EC920819
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|161713565|gb|FC062510.1|FC062510
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351055761|gb|FQ452226.1|FQ452226
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|30303667|gb|CB980461.1|CB980461
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349813075|gb|FQ411315.1|FQ411315
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351056138|gb|FQ453600.1|FQ453600
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351034611|gb|FQ457968.1|FQ457968
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|352794043|gb|FQ479285.1|FQ479285
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|30134584|gb|CB919922.1|CB919922
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|161709541|gb|FC061383.1|FC061383
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349815725|gb|FQ400881.1|FQ400881
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351048218|gb|FQ442188.1|FQ442188
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349822259|gb|FQ412523.1|FQ412523
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|77582707|gb|DV220341.1|DV220341
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349817522|gb|FQ407312.1|FQ407312
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351047355|gb|FQ451867.1|FQ451867
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349820855|gb|FQ404229.1|FQ404229
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351028371|gb|FQ427267.1|FQ427267
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|294966689|gb|GW839680.1|GW839680
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|351038103|gb|FQ460845.1|FQ460845
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|352795690|gb|FQ480278.1|FQ480278
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|349811890|gb|FQ410687.1|FQ410687
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|37185299|gb|CF604652.1|CF604652
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
EST: gi|110729425|gb|EE105376.1|EE105376
EST:     CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAG                         GAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA
genomic: CTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctga ... atgtgatcagGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTCTCAATACGAACAGCCTCAGGACTCCAACGCCGATGCTGGCTATGCCTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGgtattcctgaaagatctgattgttttgtttctctttgatttgattcatagttttcatcgctgatttgattggtgatgtgatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA