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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGGTGATGGAGCAGCGAATCAGGGGCAGTTGTTCGAGGCACTTAATATAGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaagaaatgagggattctatagtaattggaatcgggctgttgtgtgagttcgattgagtttcaatttctttgaacttcttttggcag

Basic information

species Vitis vinifera
transcript Vv01s0026g00990.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00990.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G17240.1 (Glycine max), 5'ss of exon 1
TACGGTGATGGAGCAGCGAATCAGGGGCAGTTGTTCGAGGCACTTAATATAGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaag------aaatgagg-gattctatagtaattggaatcgggctgttgtgtgagttcgattgagtttcaatttctttgaacttcttttggcag-----
||||| ||||| || || ||||||||||||||||||||||| ||||| ||  | ||||||| |||| | ||  | |||||||| |||||||| ||||||||| ||      |  ||||| | || || | |   |         || ||     |   | | ||    | | |  | ||    ||   ||          
TACGGCGATGGTGCTGCCAATCAGGGGCAGTTGTTCGAGGCGCTTAACATTTCTGCGCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTgtgagtgtgaaatgtgaggtggttttagactttgtttggataaacttttccactaaggcaaatgctaattagtacccttagcattgagttaaggaattaa

upper sequence: Vv01s0026g00990.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 1
TACGGTGATGGAGCAGCGAATCAGGGGCAGTTGTTCGAGGCACTTAATATAGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaaga-aatgagggattctatagtaattggaatcgg--gctgttg--tgtgagttcgatt------gagtttcaatttctttgaacttcttttggcag-
|| || ||||| || || |||||||| ||| | || ||||| |||||||| || ||||||| |||| | || || |||||||| |||||||| ||||||||||||  | ||| || || | |  |  ||     |||    ||||   ||  |||    ||      | | ||| |   | |  |  |||          
TATGGAGATGGCGCTGCCAATCAGGGACAGCTCTTTGAGGCGCTTAATATCGCCGCGCTTTGGGATCTTCCTGCTATTTTGGTCTGCGAGAATAATCACTgtaagtcagtgaagggttgttttttttttttttccggcaaatgttagttgctagtattgttagttgggggattcgaacccatgaactttccccctttccc

upper sequence: Vv01s0026g00990.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G40380.1 (Glycine max), 5'ss of exon 1
TACGGTGATGGAGCAGCGAATCAGGGGCAGTTGTTCGAGGCACTTAATATAGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaag----aaatgaggg---attctatagtaattggaatcgggctgttgtgtgagttcgattgagtttcaatttctttg-aacttcttttggcag----
||||||||||| || || |||||||| |||||||||||||| ||||| ||  | || |||| |||| | ||  | |||||||| |||||||| ||||||||| ||    ||||| |||    || || | |   |         || ||   | |   | ||||    |||    ||||   || |   ||   |     
TACGGTGATGGTGCTGCCAATCAGGGCCAGTTGTTCGAGGCGCTTAACATTTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTgtgagtatgaaatgtggggtggttttagactttgtttggataaacttttcctttaagacaattgttaatcagcggctttatgacattggttaaaaaatta

upper sequence: Vv01s0026g00990.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G59900.1 (Arabidopsis thaliana), 5'ss of exon 1
TACGGTGATGGAGCAGCGAATCAGGGGCAGTTGTTCGAGGCACTTAATATAGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaagaaatgagggattctatagtaattggaatcgggctgttgtgtgagttcgattgagtttcaatttct--ttgaacttcttttg-gcag
|| |||||||| || ||||||||||| |||||||| || ||  | |||||  | || |||| ||||||||| || |||||||| ||||||||||||||||||||| | |   |  |||| |  |  ||    ||    |  | |||  ||| | ||  ||   | | |||  ||||| ||  | || ||||
TATGGTGATGGTGCTGCGAATCAGGGACAGTTGTTTGAAGCTTTGAATATTTCTGCTCTTTGGGATTTGCCTGCAATTTTGGTCTGCGAGAACAATCACTgtaagcatttttgc-ttctttctttctttctttc---tttctttgtaggtttgtttt-gtcgtagtatctgattgaatttgatctgtgcag

upper sequence: Vv01s0026g00990.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S201_84V6.1 (Physcomitrella patens), 5'ss of exon 1
TACGGTGATGGAGCAGCGAATCAGGGGCAGTTGTTCGAGGCACTTAATATAGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaagaaatgagggattctatagtaattggaatcgggctgttgtgtgagttcgattgagtttcaatttct--ttgaacttcttttggcag--------------
||||||||||| || || ||||| |||||||||||||||||  | || ||  | ||||| | |||| |||| |  || |  ||||||||||||||||| ||| ||   |||  |  |||  | |   || | |  |||| |  ||  | || | |   ||   || ||    | |    |   | | | |              
TACGGTGATGGTGCTGCCAATCAAGGGCAGTTGTTCGAGGCGATGAACATCTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATTgtgagtg-tgattg-ctctgaaatc-ctgaattaaggctataatgccaatt-gctcacgtgagaagtttcgatcggtagtaagtcgacggacggggttcactgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27585723|gb|CB008418.1|CB008418
EST:     AGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACT                         ATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
genomic: AGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaagaaatg ... cttttggcagATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
EST: gi|27583148|gb|CB005843.1|CB005843
EST:     AGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACT                         ATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
genomic: AGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaagaaatg ... cttttggcagATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
EST: gi|30298455|gb|CB975249.1|CB975249
EST:     AGAACAATCACT                         ATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
genomic: AGAACAATCACTgtaagaaatg ... cttttggcagATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
EST: gi|110384826|gb|EC949291.1|EC949291
EST:     TGCCAGCGATTTTGGTTTGCGAGAACAATCACT                         ATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
genomic: TGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaagaaatg ... cttttggcagATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
EST: gi|110415427|gb|EC981335.1|EC981335
EST:     AGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACT                         ATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
genomic: AGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaagaaatg ... cttttggcagATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
EST: gi|30133148|gb|CB918487.1|CB918487
EST:     GGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACT                         ATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA
genomic: AGCGGCGCTTTTGGATTTGCCAGCGATTTTGGTTTGCGAGAACAATCACTgtaagaaatg ... cttttggcagATGGGATGGGTACGGCTGAGTGGAGAGCAGCCAAGAGTCCAGCATATTACA