1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCCTTCAACACACTCTGAGAAGCTTGTGTATTCACGAAAACTCTCAATGGGTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAAgtgagaagaaagaaaaagaattttggggaaatatctgttttagaaaagaatcccacaaatctaagttcattctagaaagcatatatccttttgttccttattttaaccatatttttctaatatatgaactatctctttctctctctattag
species | Vitis vinifera |
transcript | Vv01s0026g00350.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAA ATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAAEST: gi|110711993|gb|EE089106.1|EE089106
genomic: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAAgtgagaagaa ... tctctattagATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAA
EST: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAA ATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAAEST: gi|37187728|gb|CF607081.1|CF607081
genomic: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAAgtgagaagaa ... tctctattagATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAA
EST: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAA ATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAAEST: gi|71866843|gb|DT015898.1|DT015898
genomic: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAAgtgagaagaa ... tctctattagATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAA
EST: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAA ATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAAEST: gi|77581829|gb|DV219868.1|DV219868
genomic: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAAgtgagaagaa ... tctctattagATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAA
EST: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAA ATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAAEST: gi|71860639|gb|DT009694.1|DT009694
genomic: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAAgtgagaagaa ... tctctattagATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAA
EST: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAA ATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAA
genomic: GTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAAgtgagaagaa ... tctctattagATGGGATGGCCAAGCAGGAGCCTATGATAGGTCAAGAGGAAATAGGAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTCAACACACTCTGAGAAGCTTGTGTATTCACGAAAACTCTCAATGGGTTTATGCAGTCTTTTGGAGGATCTTGCCTAGAAACTATCCACCACCCAAgtgagaagaaagaaaaagaattttggggaaatatctgttttagaaaagaatcccacaaatctaagttcattctagaaagcatatatccttttgttccttattttaaccatatttttctaatatatgaactatctctttctctctctattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT