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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAAGGATCACACTCCCACCGTCTGGTTCGCCGACAACGGGGAGCGCCTCGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttccttctgatgttattcgtccattttttttagccttggaagttatttcggcgaccaggggttagggttttctatcaggagaggtatcatggttaattgattgattaattggttggtcgattgttcag

Basic information

species Vitis vinifera
transcript Vv01s0011g06630.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g06630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G03610.2 (Glycine max), 5'ss of exon 1
GCCAAGGATCACACTCCCACCGTCTGGTTCGCCGACAACGGGGAGCGCCTCGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttccttctgatgttattcgtccattttttt--tagccttggaagttatttcggcgaccaggggttagggttttctatcaggagaggtatcatggttaattgattgattaattggttggtcgattgttcag
|||||||| ||||  |||||||||||||||||||||||||| || |||||||||||||| || || |||||||| |||||||||  |||||| ||||| || | |   | | ||   |||| |   | ||| |||||  ||   |||  | | ||       |    || ||  | |  |   ||||                                                  
GCCAAGGACCACAACCCCACCGTCTGGTTCGCCGACAACGGCGAACGCCTCGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAAgcaagctcttcatc-actgttttcaattcatctttttaataatattgatactgatagtaattaatttggattctgatgctgcttcag--------------------------------------------------

upper sequence: Vv01s0011g06630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G46280.3 (Arabidopsis thaliana), 5'ss of exon 1
GCCAAGGATCACACTCCCACCGTCTGGTTCGCCGACAACGGGGAGCGCCTCGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtct--------tccttctgatgttattcgtccattttttttagccttggaagttatttcggcgaccag--gggttagggttttc--tatcaggagaggtatcatggttaattgatt---gattaattggttggtcgattgttcag
|||||||| ||||| |||||| ||||||| ||||| ||||| |||||||| || || || ||||| ||||||||||| ||||||  ||| ||||||||| ||| || |          ||||  ||  |||     |  |  ||  |  | | |   |    |  || || ||   | |||||||||    ||||  | ||  | |   |  | | |  ||      | | || || || ||||  | ||
GCCAAGGACCACACACCCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttctcaatttctcttcaaatagtatcgagtcgatgattagattcattgtt-tccccttagctacaagcttgtttagggtttatagtatcgagtgaattctgtcgtcttagtctttcaaagctgaatgtttagt-gatttcttag

upper sequence: Vv01s0011g06630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G46290.1 (Arabidopsis thaliana), 5'ss of exon 2
GCCAAGGATCACACTCCCACCGTCTGGTTCGCCGACAACGGGGAGCGCCTCGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttccttctgatgttattcgtccattttttttagccttggaagttatttcggcgaccaggggttagggttttctatcaggagaggta-----tcatggttaattgattgattaattggttggtcgattgttcag
||||| || ||||||||||| |||||||| ||||| ||||| ||||| || ||||| || ||||| ||||  ||||| ||||||  ||| ||| ||||||||| ||  ||       | | |       ||  | | |||     | | |   ||| |     |||  ||| |   || | |  |  |   ||     |||| | | |  ||||  |   ||| |||   ||||  | ||
GCCAAAGACCACACTCCCACAGTCTGGTTTGCCGATAACGGCGAGCGTCTTGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATATCTCCAgtaagtggtctcagcc-tctcaaattcaaatagtatatagtggatggaatggattcagt--ttaggatttaagtcgttgtctttgttgttttagtctttcatagcttaacgattagtgttttgtttg--tgatttcttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349811833|gb|FQ410630.1|FQ410630
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351053113|gb|FQ455570.1|FQ455570
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351045922|gb|FQ441305.1|FQ441305
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|161715917|gb|FC068743.1|FC068743
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351037979|gb|FQ465217.1|FQ465217
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351049149|gb|FQ449871.1|FQ449871
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351048997|gb|FQ449840.1|FQ449840
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351039814|gb|FQ464852.1|FQ464852
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351048315|gb|FQ449407.1|FQ449407
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|161714768|gb|FC063928.1|FC063928
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351035651|gb|FQ463496.1|FQ463496
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCGGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351025059|gb|FQ433476.1|FQ433476
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|349811971|gb|FQ410768.1|FQ410768
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351036544|gb|FQ457257.1|FQ457257
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351055042|gb|FQ440381.1|FQ440381
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|161719546|gb|FC067966.1|FC067966
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351012497|gb|FQ430061.1|FQ430061
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351040625|gb|FQ438169.1|FQ438169
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGCCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351048939|gb|FQ449782.1|FQ449782
EST:     CGGCACCTATCGTGGACACCACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351048235|gb|FQ442205.1|FQ442205
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351015244|gb|FQ445528.1|FQ445528
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|349831103|gb|FQ420773.1|FQ420773
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351029364|gb|FQ436758.1|FQ436758
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351012844|gb|FQ430407.1|FQ430407
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351053994|gb|FQ441760.1|FQ441760
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
EST: gi|351055014|gb|FQ440353.1|FQ440353
EST:     CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCA                         GGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT
genomic: CGGCACCTATCGTGGACACAACGGTGCCGTTTGGACCTGCGATGTCTCCAgtatgtcttc ... gattgttcagGGGATTCGATGCGGCTGATCACTGGAAGTGCAGACCAGACGGTGAAGCTAT