Sequence
atgc intronic sequence ATGC exonic sequenceAGGAGCTGGACAAGATTTTGTTCTTCTATCCAGCTGATTTGCCCTTTTCTACGCAGCTTTCCGTGATAGGGCTCAGCGAAGGGCTCATCACTTTTACAAGgttaggtgcttgtatatattggaaatttctgttataatcaatttatctcgtgcaaatttatccagctgagctttctttttggtgagtcattacccttgat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g06030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G34400.1 (Glycine max), 5'ss of exon 1
AGGAGCTGGACAAGATTTTGTTCTTCTATCCAGCTGATTTGCCCTTTTCTACGCAGCTTTCCGTGATAGGGCTCAGCGAAGGGCTCATCACTTTTACAAGgttaggtgcttgtatatattggaaatttctgttataatcaatttatctcgtgcaaatttatccag-ctgagctttctttttggtgagtcattacccttgat
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AAGAGCTCGATAAGATTCTCTTCTTCTTCCCCGCCGGTTTGCCCTTTTCAAAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGgtt---tgtttgt-taggtt---accctgcttatctctcaaattattt--tactaattgattcattctgcaattccag-----------------------
upper sequence: Vv01s0011g06030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G80910.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGAGCTGGACAAGATTTTGTTCTTCTATCCAGCTGATTTGCCCTTTTCTACGCAGCTTTCCGTGATAGGGCTCAGCGAAGGGCTCATCACTTTTACAAGgttaggtgcttg----------tatatattggaaatttctg---ttata-atcaatttatctcgtg-caaatttatccag---ctgagctttctt----tttggtgagtcat----tacccttgat--------------------------
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AGGAACTGGACAAGATCTTGTTCTTCTATCCTCCTGATCTAACCTTCTCCACTCAGCTATCGGTTATAGGTCTCAGTGAAGGGCTTATCACGTTCACGAGgttagctactagagattttccttctttacacagatttttcgagttcatggattgattgatgttgtctcatgttcacataaattttgagcgttattagcttttcctgtattgttgggtgttcctgagacgtggtttatggaatataaacacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188663|gb|CF608012.1|CF608012EST: ACGCAGCTTTCCGTGATAGGGCTCAGCGAAGGGCTCATCACTTTTACAAG AATCTTTTCTCCAGAGGCTGCTTGTGAGGTTATAGAAGCAGAGAGGCATTC
genomic: ACGCAGCTTTCCGTGATAGGGCTCAGCGAAGGGCTCATCACTTTTACAAGgttaggtgct ... ttttgtgcagAATCTTTTCTCCAGAGGCTGCTTGTGAGGTTATAGAAGCAGAGAGGCATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAGCTGGACAAGATTTTGTTCTTCTATCCAGCTGATTTGCCCTTTTCTACGCAGCTTTCCGTGATAGGGCTCAGCGAAGGGCTCATCACTTTTACAAGgttaggtgcttgtatatattggaaatttctgttataatcaatttatctcgtgcaaatttatccagctgagctttctttttggtgagtcattacccttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa