Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383250|gb|EC947609.1|EC947609EST: CTGAGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAG ATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
genomic: CTGCGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAGgtagggtaat ... cttaatttagATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
EST:
gi|110687439|gb|EE064851.1|EE064851EST: CTGAGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAG ATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
genomic: CTGCGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAGgtagggtaat ... cttaatttagATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
EST:
gi|110363232|gb|EC926808.1|EC926808EST: GATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAG ATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
genomic: GATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAGgtagggtaat ... cttaatttagATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
EST:
gi|18458159|gb|BM436437.1|BM436437EST: CTGAGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAG ATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
genomic: CTGCGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAGgtagggtaat ... cttaatttagATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
EST:
gi|110363231|gb|EC926807.1|EC926807EST: AAGAGCCCGTTGAGCTGAAAAAAGGTCGACAGGCAG ATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
genomic: AAGAGCCCGTTGAGCTG-AAAAAGGTCGACAGGCAGgtagggtaat ... cttaatttagATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
EST:
gi|110386741|gb|EC951362.1|EC951362EST: CTGAGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAG ATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
genomic: CTGCGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAGgtagggtaat ... cttaatttagATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTATCATTATTGGAACCGCAAAAGATGGAGAATTCATCTTCTCCAGTTTCTGCGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAGgtagggtaattctttgtttatgacatttttctttgttgctatgacactgtcacattattgcatgcttttgctttataattttttatgtttcctaatacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA