Sequence
atgc intronic sequence ATGC exonic sequenceGAAGCGTCTGATTCCGACTCTGAACCGAGTTTTGGTGGAGAAGATCATTCCTCCATCCAAAACCTCAGCTGGTATTCTTCTTCCGGAGAAGTCCCCCCAGgtacggtatcctattgtctccgtatctttatctgtctatgatcaagggttgtgattgatggatgtgttcgatgattgtggacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04990.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G23100.1 (Arabidopsis thaliana), 5'ss of exon 1
GAAGCGTCTGATTCCGACTCTGAACCGAGTTTTGGTGGAGAAGATCATTCCTCCATCCAAAACCTCAGCTGGTATTCTTCTTCCGGAGAAGTCCCCCCAGgta--cggtatcctattgtctccgtatctttatctgtctatgatcaagggttgtgattgatggatgtgttcgat--gattgtggacag
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GAAGCGTTTGATCCCGACTCTCAACCGTGTATTGGTGGAGAAGATTCTCCCACCGTCAAAGACCGTCTCCGGCATTCTCCTACCGGAGAAATCATCTCAGgtaaacgaatttctttaaaattctcatctttacccatttct--tcgattgg-acgaactagaaatttgttggatttgattaaacacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110709992|gb|EE085935.1|EE085935EST: CTCCATCCAAAACCTCAGCTGGTATTCTTCTTCCGGAGAAGTCCCCCCAG CTGAACTCTGGGAAAGTGATAGCAGTAGGACCTGGTCTACGTGATAGAGAA
genomic: CTCCATCCAAAACCTCAGCTGGTATTCTTCTTCCGGAGAAGTCCCCCCAGgtacggtatc ... ttgtggacagCTGAACTCTGGGAAAGTGATAGCAGTAGGACCTGGTCTACGTGATAGAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGCGTCTGATTCCGACTCTGAACCGAGTTTTGGTGGAGAAGATCATTCCTCCATCCAAAACCTCAGCTGGTATTCTTCTTCCGGAGAAGTCCCCCCAGgtacggtatcctattgtctccgtatctttatctgtctatgatcaagggttgtgattgatggatgtgttcgatgattgtggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT