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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTTCTGCGGCGGTGGGGGCGAAGGCCGCAGCGGCATCCCCAACGCTCTTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttagatttattttttctttttattttggggtcagatttgattttttttttgttaattcgatttgttgtttttttattttgtgtttacattgaatt...

Basic information

species Vitis vinifera
transcript Vv01s0011g04970.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713595|gb|EE089653.1|EE089653
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAAATCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAC
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|37185447|gb|CF604800.1|CF604800
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|110711442|gb|EE087923.1|EE087923
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAAATCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAC
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|110712942|gb|EE088427.1|EE088427
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|110698023|gb|EE075561.1|EE075561
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|26261968|gb|CA813031.1|CA813031
EST:     TTCTTCTCGCCGAATTCGATTTTGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTNTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAC
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|110713391|gb|EE089281.1|EE089281
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|37189078|gb|CF608427.1|CF608427
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|110377427|gb|EC942492.1|EC942492
EST:     GCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAC
genomic: GCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|294964979|gb|GW838782.1|GW838782
EST:     TTCTTCTCGCCGAATTCGATTTTGCCTCCAATTCTCTATCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAC
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|161721290|gb|FC069698.1|FC069698
EST:     TTCTTCTCGCCGAATTCGATTTTGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAC
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|33402025|gb|CF207652.1|CF207652
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|110709550|gb|EE085108.1|EE085108
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|110711776|gb|EE088641.1|EE088641
EST:     TTCTTCTCGCTGAATTCGATTTCGCCTCCAAATCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAC
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT
EST: gi|110380366|gb|EC945626.1|EC945626
EST:     TTCTTCTCGCCGAATTCGATTTTGCCTCCAATTCTCTCTCCGATATGCCC                         GTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAC
genomic: TTCTTCTCGCTGAATTCGATTTCGCCTCCAATTCTCTCTCCGATATGCCCgtgagttaga ... tttatttcagGTGTTTAAACTTGGAATAGGTGCTGATTTACCTTATAGAATGGCTGTGCAT