1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAATGTTATTGAACCATTTCACCGCTTTGTTGGAAAGGAGATGCTAACAGACCTGTCTTACCCATTGCAAACCAATACTATTCCCTTTTGGAGTGTACCAgtaagtgccaacttaagacaaaccatacgtggaaaattttgatatttgttgaaattgcacatatcacttttatgacaaccactgtaaaagaataatattttcatccttttgttttttggcag
species | Vitis vinifera |
transcript | Vv01s0011g04180.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCTGTCTTACCCATTGCAAACCAATACTATTCCCTTTTGGAGTGTACCA TTAATTGCAATATTGTTACCCATTGTTGTGATTCTTGTCTACTACTTCATTEST: gi|110380481|gb|EC945749.1|EC945749
genomic: ACCTGTCTTACCCATTGCAAACCAATACTATTCCCTTTTGGAGTGTACCAgtaagtgcca ... tttttggcagTTAATTGCAATATTGTTACCCATTGTTGTGATTCTTGTCTACTACTTCATT
EST: CTTACCCATTGCAAACCAATACTATTCCCTTTTGGAGTGTACCA TTAATTGCAATATTGTTACCCATTGTTGTGATTCTTGTCTACTACTTCATT
genomic: CTTACCCATTGCAAACCAATACTATTCCCTTTTGGAGTGTACCAgtaagtgcca ... tttttggcagTTAATTGCAATATTGTTACCCATTGTTGTGATTCTTGTCTACTACTTCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGTTATTGAACCATTTCACCGCTTTGTTGGAAAGGAGATGCTAACAGACCTGTCTTACCCATTGCAAACCAATACTATTCCCTTTTGGAGTGTACCAgtaagtgccaacttaagacaaaccatacgtggaaaattttgatatttgttgaaattgcacatatcacttttatgacaaccactgtaaaagaataatattttcatccttttgttttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG