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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGCGGGATGCAACAGAATAGTAAACAACGTCTCTTGGGGCGCTTGTGATTTAGTCGCTTTTGGTGCCGAAAACGGCGTCGCTATATTCTGCCCTAAGgttgctacactttccttagtttgattttccctctaactctgaactgtagattgttgaaatacctatatttgattttgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g04130.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04130.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G25600.1 (Glycine max), 5'ss of exon 1
AGGAGCGGGATGCAACAGAATAGTAAACAACGTCTCTTGGGGCGCTTGTGATTTAGTCGCTTTTGGTGCCGAAAACGGCGTCGCTATATTCTGCCCTAAGgttgc---tacactttccttagtttg---attttccctctaactctgaactgtagattgttgaaatacctatatttgatt--ttgcag
 ||||||||||||||||||||||| |||||||| || ||||| |||| || |||  || ||||||| ||  | |||| ||| ||||| |||||||| |||||| |   | ||||||  |    ||    | | ||| | || || |||  |    ||  ||  | |   | | || |  |  | ||||
TGGAGCGGGATGCAACAGAATAGTGAACAACGTTTCATGGGGTGCTTCTGGTTTGCTCTCTTTTGGAGCTCACAACGCCGTTGCTATTTTCTGCCCCAAGgttcccttttcacttttttctacttttacactctccttttatctttgattttctcatctttttattcttttttttggggtgttcgcag

upper sequence: Vv01s0011g04130.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G41620.1 (Glycine max), 5'ss of exon 1
AGGAGCGGGATGCAACAGAATAGTAAACAACGTCTCTTGGGGCGCTTGTGATTTAGTCGCTTTTGGTGCCGAAAACGGCGTCGCTATATTCTGCCCTAAGgtt-gctacactttccttagtttgattttccctctaactctgaactgtagattgttgaaatacctatatttgat-tttgcag
 ||||||||||||||||||||||| |||||||| || ||||| |||| || |||  || ||||||| ||  | |||| ||| ||||| |||||||| |||||   ||   |  ||  |  | |  |||| |   |  |  |  |   |||||| ||   |||  ||||||| || || ||||
TGGAGCGGGATGCAACAGAATAGTCAACAACGTTTCATGGGGTGCTTCTGGTTTGCTCTCTTTTGGAGCTCACAACGCCGTTGCTATTTTCTGCCCCAAGgtccactttgcactctct--tctactttttcacttgccattttatcttagattttttttatatatatattttatgttcgcag

upper sequence: Vv01s0011g04130.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G49540.1 (Arabidopsis thaliana), 5'ss of exon 1
AGGAGCGGGATGCAACAGAATAGTAAACAACGTCTCTTGGGGCGCTTGTGATTTAGTCGCTTTTGGTGCCGAAAACGGCGTCGCTATATTCTGCCCTAAGgttgctacactttccttagtttgattttccctctaactctgaactgtagattgttgaaatacctatatttgattttgcag---------------------------
|||||| |||||||||||| | || || |||||||||||||| |||| || | | ||| |||| |||||| |||||| ||| ||| | ||||||||||||||   |    |   ||    |||  | || || | |   | |     | |     ||  |   | | ||||  | ||                              
AGGAGCAGGATGCAACAGAGTCGTCAATAACGTCTCTTGGGGAGCTTCTGGTCTTGTCTCTTTCGGTGCCCAAAACGCCGTTGCTGTTTTCTGCCCTAAGgtctgtttgttccactc---ttgtctctctctttcaaaatcattccaaaagcaaagatgtgattttttttgggtgtgttttgtgtctttgtttaatgtttttttcag