1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCGCAGCCCGGAGATTTTGGCCAGGAAACAAAGACTGGAAAAGTGAATTTTGTATCATCTCCTCCAGCTTCTGGGTCTGAGTTCCTTGGAGATAATAAGgttaaagcttcagggaaataatgcaccttgaatttttgtttaatgcttttgttagttgtatctattttcaggctttgatgcatcagtcttttatgtgaagcataggattgttttgctttgatatttgcag
species | Vitis vinifera |
transcript | Vv01s0011g03720.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGTTCCTTGGAGATAATAAG AACTTGGATCGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAAEST: gi|33402267|gb|CF207894.1|CF207894
genomic: AGTTCCTTGGAGATAATAAGgttaaagctt ... atatttgcagAACTTGGGTGGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAA
EST: TTGTATCATCTCCTCCAGCTTCTGGGTCTGAGTTCCTTGGAGATAATAAG AACTTGGGTGGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAAEST: gi|33405074|gb|CF210701.1|CF210701
genomic: TTGTATCATCTCCTCCAGCTTCTGGGTCTGAGTTCCTTGGAGATAATAAGgttaaagctt ... atatttgcagAACTTGGGTGGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAA
EST: TTGTATCATCTCCTCCAGCTTCTGGGTCTGAGTTCCTTGGAGATAATAAG AACTTGGGTGGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAAEST: gi|33405155|gb|CF210782.1|CF210782
genomic: TTGTATCATCTCCTCCAGCTTCTGGGTCTGAGTTCCTTGGAGATAATAAGgttaaagctt ... atatttgcagAACTTGGGTGGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAA
EST: GTTCCTTGGAGATAATAAG AACTTGGGTGGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAA
genomic: GTTCCTTGGAGATAATAAGgttaaagctt ... atatttgcagAACTTGGGTGGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCAGCCCGGAGATTTTGGCCAGGAAACAAAGACTGGAAAAGTGAATTTTGTATCATCTCCTCCAGCTTCTGGGTCTGAGTTCCTTGGAGATAATAAGgttaaagcttcagggaaataatgcaccttgaatttttgtttaatgcttttgttagttgtatctattttcaggctttgatgcatcagtcttttatgtgaagcataggattgttttgctttgatatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT