1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGAGGTGTCATGATTATATCGAAGCATTGGAGGAGGAGCGTCGAAAGATTCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGgtataccccatctctctctttttcttccttatttttttttctctgttttagattttgaggtgttgagtggatgtgtgtcgtgggtttgcag
species | Vitis vinifera |
transcript | Vv01s0011g03110.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAG CGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTCEST: gi|161720667|gb|FC070611.1|FC070611
genomic: TCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGgtatacccca ... gggtttgcagCGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTC
EST: TCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAG CGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTCEST: gi|161707741|gb|FC056067.1|FC056067
genomic: TCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGgtatacccca ... gggtttgcagCGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTC
EST: TCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAG CGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTCEST: gi|161719475|gb|FC067685.1|FC067685
genomic: TCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGgtatacccca ... gggtttgcagCGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTC
EST: TCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAG CGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTC
genomic: TCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGgtatacccca ... gggtttgcagCGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGGTGTCATGATTATATCGAAGCATTGGAGGAGGAGCGTCGAAAGATTCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGgtataccccatctctctctttttcttccttatttttttttctctgttttagattttgaggtgttgagtggatgtgtgtcgtgggtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT