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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTTTCTTTTCTCTGGAAGAATGATTTTTTCTGTTGGTTTGGGTGCTTCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAGgtactctctttccagaaatctctcaccctagataaaaggagagtttgattgttctaatgctggggaaattttggaacag

Basic information

species Vitis vinifera
transcript Vv01s0011g01610.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389333|gb|EC954162.1|EC954162
EST:     TCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAG                         GTACACTGCATCAACAACAACAAGGGCTGTTAGGGTTTTGGGGACTGCAAA
genomic: TCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAGgtactctctt ... tttggaacagGTACACTGCATCAACAACAACAAGGGCTGTTAGGGTTTTGGGGACTGCAAA
EST: gi|110384323|gb|EC948751.1|EC948751
EST:     TCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAG                         GTACACTGCATCAACAACAACAAGGGCTGTTAGGGTTTTGGGGACTGCAAA
genomic: TCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAGgtactctctt ... tttggaacagGTACACTGCATCAACAACAACAAGGGCTGTTAGGGTTTTGGGGACTGCAAA
EST: gi|71867299|gb|DT016354.1|DT016354
EST:     TCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAG                         GTACACTGCATCAACAACAACAAGGGCTGTTAGGGTTTTGGGGACTGCAAA
genomic: TCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAGgtactctctt ... tttggaacagGTACACTGCATCAACAACAACAAGGGCTGTTAGGGTTTTGGGGACTGCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTTTTCTTTTCTCTGGAAGAATGATTTTTTCTGTTGGTTTGGGTGCTTCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAGgtactctctttccagaaatctctcaccctagataaaaggagagtttgattgttctaatgctggggaaattttggaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC