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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTACTGCCAAAGAAGAAGAACAAGACGGAATGTCCGTACACTCTCCGTGCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAATgtatgcattcgtgtctcagtttcttttctttctttctttctttatttttttctttttggtgtgggggggtggggttccttaggttttttttgttgaattaggatgtctctttgttgttaaacag

Basic information

species Vitis vinifera
transcript Vv01s0011g00610.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189645|gb|CF608994.1|CF608994
EST:     CTTTCCAAGGCATCTCTAAAT                         GAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
genomic: CTTTCCAAGGCATCTCTAAATgtatgcattc ... tgttaaacagGAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
EST: gi|349823301|gb|FQ400280.1|FQ400280
EST:     GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAAT                         GAGCAATCTCAAGTTGATTTGGAACTCCGAATTCCTGAAGCTCTTGAAATT
genomic: GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAATgtatgcattc ... tgttaaacagGAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
EST: gi|110398739|gb|EC965213.1|EC965213
EST:     GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAAT                         GAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
genomic: GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAATgtatgcattc ... tgttaaacagGAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
EST: gi|351019014|gb|FQ426513.1|FQ426513
EST:     GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAAT                         GAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
genomic: GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAATgtatgcattc ... tgttaaacagGAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
EST: gi|254916779|gb|GR905605.1|GR905605
EST:     GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAAT                         GAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
genomic: GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAATgtatgcattc ... tgttaaacagGAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
EST: gi|110422343|gb|EC988664.1|EC988664
EST:     GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAAT                         GAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
genomic: GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAATgtatgcattc ... tgttaaacagGAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
EST: gi|349816866|gb|FQ399734.1|FQ399734
EST:     GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAAT                         GAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT
genomic: GCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAATgtatgcattc ... tgttaaacagGAGCAATCTCAAGTTGATTTGGAACTCCGAATTCTTGAAGCTCTTGAAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGTACTGCCAAAGAAGAAGAACAAGACGGAATGTCCGTACACTCTCCGTGCAAAGCTCCCCCTTCTTCCACTTCTTCTCTTTCCAAGGCATCTCTAAATgtatgcattcgtgtctcagtttcttttctttctttctttctttatttttttctttttggtgtgggggggtggggttccttaggttttttttgttgaattaggatgtctctttgttgttaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG