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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGATGTGTTCCCTTCATTCATTCCGAAAGAAGTCGAGAGAATCAAAGACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaacaggagtgtttggtttccgagaaaaaaatatatttcttgaaaaacaagtgtaggaaaagtgaatttacctagtcgaagacatcgcatggt...

Basic information

species Vitis vinifera
transcript Vv01s0011g00550.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351051568|gb|FQ450120.1|FQ450120
EST:     ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG                         CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: gi|110430267|gb|EC996810.1|EC996810
EST:     ACCCATTTGCCCGAAAGCTAGCGACAAGGATCGAGAGACTGCCTGTGCAG                         CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: gi|349808731|gb|FQ406581.1|FQ406581
EST:     ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG                         CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: gi|352786080|gb|FQ481875.1|FQ481875
EST:     ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG                         CTTAGCTCCTCCAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: gi|351042817|gb|FQ434379.1|FQ434379
EST:     ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG                         CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: gi|351054615|gb|FQ456812.1|FQ456812
EST:     ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG                         CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: gi|349829486|gb|FQ420018.1|FQ420018
EST:     ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG                         CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: gi|349830592|gb|FQ416890.1|FQ416890
EST:     ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG                         CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCGATGTGTTCCCTTCATTCATTCCGAAAGAAGTCGAGAGAATCAAAGACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaacaggagtgtttggtttccgagaaaaaaatatatttcttgaaaaacaagtgtaggaaaagtgaatttacctagtcgaagacatcgcatggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaca