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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctctaatctctattctcaattcattcgatcgacttctagtttatacaatcgtttggatgcttagaaactatgagaaaaccaaagaaaaatttga...

Basic information

species Vitis vinifera
transcript Vv01s0010g02900.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351020097|gb|FQ445704.1|FQ445704
EST:     AAACGCTGCGTTTCGATCGATCTGTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: AAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110697158|gb|EE073899.1|EE073899
EST:     CGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|71856922|gb|DT005977.1|DT005977
EST:     CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|71862964|gb|DT012019.1|DT012019
EST:     CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110687524|gb|EE065028.1|EE065028
EST:     CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|156735848|gb|EV239969.1|EV239969
EST:     GTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTCATTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: GTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|294966461|gb|GW839568.1|GW839568
EST:     CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110698339|gb|EE075751.1|EE075751
EST:     CGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGCCCTTGAGTCAACTGTACCGCTC
genomic: CGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|71864543|gb|DT013598.1|DT013598
EST:     CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|71871573|gb|DT020628.1|DT020628
EST:     CGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110723155|gb|EE100145.1|EE100145
EST:     CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|71857078|gb|DT006133.1|DT006133
EST:     CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110727856|gb|EE105095.1|EE105095
EST:     CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110733141|gb|EE109075.1|EE109075
EST:     CTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|71856981|gb|DT006036.1|DT006036
EST:     CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|37184921|gb|CF604274.1|CF604274
EST:     CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|71862057|gb|DT011112.1|DT011112
EST:     CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110367168|gb|EC931094.1|EC931094
EST:     TTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: TTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|351033347|gb|FQ446579.1|FQ446579
EST:     CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110397717|gb|EC963560.1|EC963560
EST:     TTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: TTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110372494|gb|EC936666.1|EC936666
EST:     CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|161720849|gb|FC069601.1|FC069601
EST:     CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110691315|gb|EE069273.1|EE069273
EST:     CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110732056|gb|EE107008.1|EE107008
EST:     ATCGATCTGTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: ATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|110726596|gb|EE102526.1|EE102526
EST:     CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: gi|37183791|gb|CF603145.1|CF603145
EST:     CAGTTCTTCTCC-AACGCTGCGTTTCGATCGATCTTTGAGTTCTAG                         GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctctaatctctattctcaattcattcgatcgacttctagtttatacaatcgtttggatgcttagaaactatgagaaaaccaaagaaaaatttga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa