Sequence
atgc intronic sequence ATGC exonic sequenceGAAGGATAGGGATGGAGGTGGTGCATTATCAGCTTGCTAGGTGTTCTTACCAAGATTCTATTAAGGTTCTGGAGGCTGATGTACAGCATGCCAATGCTTTgtgagttttctttgggtttcttgctctgaattatctgttctctgcctgtttgttgttggttcctgttctctctctctagtttatgtcctcttggtgaatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G01460.2 (Glycine max), 5'ss of exon 1
GAAGGATAGGGATGGAGGTGGTGCATTATCAGCTTGCTAGGTGTTCTTACCAAGATTCTATTAAGGTTCTGGAGGCTGATGTACAGCATGCCAATGCTTTgtgagttttctttgggtttcttgct--ctgaattatctgttctctgcctgtttgttgttggttcctgttctctctctcta-gtttatgtcctcttggtgaatt
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AAAGTAGAAAGATGGCAATGATTCCTTACCACCTTTGCCGTTTACCTTACCAGGATTCCCTCAAAGCACTTGAGGCTGATATACAGCACGCCAATGCTTTgtgagttttcttttttatttttccctaccctttaaattttttttcaccaatttattaactttcccctttttttcttcttacaaatatatgtttttggtta---
upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G37510.1 (Glycine max), 5'ss of exon 1
GAAGGATAGGGATGGAGGTGGTGCATTATCAGCTTGCTAGGTGTTCTTACCAAGATTCTATTAAGGTTCTGGAGGCTGATGTACAGCATGCCAATGCTTTgtgagttttctt-tgggtttcttgctctgaattatctgttctctgcctgtttgttgttggttcctgttctctctctctagtttatgtcctcttggtgaatt----
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TAAAGGGAAAGATGGCAATGATTCCGTACCACCTTTGCCGTTTACCTTACCAGGATTCCCTCAAAGCACTTGAAGCTGATATACAGCACGCCAATGCTTTgtgagttttcttgttagttttttttt-----tttcctcccctttaaattttcttcaccaatttattaactttcccttttttttgggtactaggaaaaaagtgggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134955|gb|CB920293.1|CB920293EST: CAAGATTCTATTAAGGTTCTGGAGGCTGATGTACAGCATGCCAATGCTTT GGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATT
genomic: CAAGATTCTATTAAGGTTCTGGAGGCTGATGTACAGCATGCCAATGCTTTgtgagttttc ... cggttttcagGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGGATAGGGATGGAGGTGGTGCATTATCAGCTTGCTAGGTGTTCTTACCAAGATTCTATTAAGGTTCTGGAGGCTGATGTACAGCATGCCAATGCTTTgtgagttttctttgggtttcttgctctgaattatctgttctctgcctgtttgttgttggttcctgttctctctctctagtttatgtcctcttggtgaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc