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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGTCGTCCCGCCGCCTCATTGAGCCTGCTTCTTCCACCAACGAGTTAATTGGTGAACCTGCAGCCTCGGATAGTCATCTTTGGAGCCATGTTCTATTgtaagtttagatgttgcatcatctacaaggacataaaaaggatactttattattgtcatattggtttcttctttgtatacattagtattcatcttcgtgt...

Basic information

species Vitis vinifera
transcript Vv01s0010g02070.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712498|gb|FC061803.1|FC061803
EST:     ATTGGTGAACCTGCAGCCTCGGATAGTCATCTTTGGAGCCATGTTCTATT                         AAATGTTGGAAGCAATGGAGATTTGCATGGTAGTCAAGATGTTGGAGAGAA
genomic: ATTGGTGAACCTGCAGCCTCGGATAGTCATCTTTGGAGCCATGTTCTATTgtaagtttag ... tacctcgcagAAATGTTGGAAGCAATGGAGATTTGCATGGTAGTCAAGATGTTGGAGAGAA
EST: gi|161720863|gb|FC070978.1|FC070978
EST:     ATTGGTGAACCTGCAGCCTCGGATAGTCATCTTTGGAGCCATGTTCTATT                         AAATGTTGGAAGCAATGGAGATTTGCATGGTAGTCAAGATGTTGGAGAGAA
genomic: ATTGGTGAACCTGCAGCCTCGGATAGTCATCTTTGGAGCCATGTTCTATTgtaagtttag ... tacctcgcagAAATGTTGGAAGCAATGGAGATTTGCATGGTAGTCAAGATGTTGGAGAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGAGTCGTCCCGCCGCCTCATTGAGCCTGCTTCTTCCACCAACGAGTTAATTGGTGAACCTGCAGCCTCGGATAGTCATCTTTGGAGCCATGTTCTATTgtaagtttagatgttgcatcatctacaaggacataaaaaggatactttattattgtcatattggtttcttctttgtatacattagtattcatcttcgtgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa