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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgactggctattatttgaaattccatattgtgcttgttttacaagccttttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag

Basic information

species Vitis vinifera
transcript Vv01s0010g01410.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os07g19560.1 (Oryza sativa), 5'ss of exon 2
AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgactggctattatttgaaattccatattgtgcttgttttacaagccttttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag
| ||| |||  ||||||| ||||| ||||| || ||  |||||| |||||| ||||| || ||| |||||||||||||||||||||| |||||| ||||||||     |||  |  | ||  ||||  ||  |||  |     ||  |  | |  | ||  |   |      ||| |   |||   ||  | |  | |||  ||  || ||  ||||| |               
AAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGgtatggggtcttcccaggtaacatttttaaagccacttcaaaattactgaagattctttaagccctt----gcttca-gtgttgtgataattagtcattt--tctgttctcgatctcaatag-------------

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os07g19560.2 (Oryza sativa), 5'ss of exon 2
AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgactggctattatttgaaattccatattgtgcttgttttacaagccttttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag
                 | ||||| ||||| || ||  |||||| |||||| ||||| || ||| |||||||||||||||||||||| |||||| ||||||||     |||  |  | ||  ||||  ||  |||  |     ||  |  | |  | ||  |   |      ||| |   |||   ||  | |  | |||  ||  || ||  ||||| |               
-----------------GTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGGTATGGGGTCTTCCCAGgtaacatttttaaagccacttcaaaattactgaagattctttaagccctt----gcttca-gtgttgtgataattagtcattt--tctgttctcgatctcaatag-------------

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os09g12800.1 (Oryza sativa), 5'ss of exon 2
AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgactggctattatttgaaattccatatt-gt-gcttgttttacaagccttttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag
| ||| |||  ||||||||||||| ||||| || ||  |||||| |||||| ||||| || ||| |||| || |||||||||||||| |||||| | ||||||       ||  |||   |  |   |     ||| || || |||  ||  |  |  |||      | |    ||| ||            |  || ||||||    ||    |   ||                 
AAGAGGCCCCCCAAATGGCTCTGTTTATGTGTGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCCGATTATTTTGGCACCATAGGGTTGCTGAAGgta-------tggatgggggtcttcccaggcaacatttttgtagctgattaaaagattcttcaagcctttgtcgcttcattttcatggtaattagtcattttctgttgttgatctcaacag----------------

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AC233865.1_FGT006 (Zea mays), 5'ss of exon 2
AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgactggctattatttgaaattccatattgtgcttgttttacaagccttttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag
                || ||||| ||||| || ||  | |||| |||||||||||||| ||||||||||||||||||||||||||| || ||| |||||||| |   ||| ||  | ||  ||||       | ||       | ||| | |    |  |   || ||||      | |     ||  || | |||  |||    | |    |  ||                 
----------------GGTTCTGTGTATGTCTGCAATCTACCTCCTGGAACTGATGAAAATATGTTGGCTGAATATTTTGGCACCATAGGCTTGCTAAAGGTA-TGGGTCTTACCAGgtaacatttttggccac-taccaaaaat-tttaagattgttcatacattttaaattccatttaaa--gaacacttagcctcgtctctgttgtaaaattgcaacag-------------

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AC185415.3_FGT005 (Zea mays), 5'ss of exon 2
AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgactggctattatttgaaattcca-tattgtgcttgttttacaagccttttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag
| |||  ||   |||||| ||||| ||||| || ||  | |||| ||||||||| || | ||||||||||||||||||||||||||| |||||| |||||||| |   ||| ||  | ||  ||||      ||| ||       | ||| | |    || | | ||   ||      | |     ||  || | |||| | | |  |    ||   ||                 
AAGAGGGCCCCAAAATGGTTCTGTGTATGTCTGCAATCTACCTCCTGGAACTGACGAGAATATGTTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGgta-tgggtcttaccaggtaacatttttttggccactaccaaaagtctttaagattgtttatatattcccaattacatttaaa--gaacacttagccttgtttgctgtaaaattgaacag----------------

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G11060.1 (Glycine max), 5'ss of exon 1
AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgact-------ggctattatttgaaattccatattgtgcttgttttacaagccttttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag
    |||||||||||||| ||||||||||| || ||||||||  |||| ||||| || | |||| |||||||||||||||| ||||| || || |||||||||   | ||||  |       ||| |  |||  ||| |  || || | ||| || |  ||   | ||   |  || |    || |  |   ||  || ||                                         
TCATGCCCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGATATTATGCTGGCTGAATATTTTGGTACCATCGGATTAATAAAGgtatggagtctgcatcatgcatggcaaccatt--aaaattaatgttat-cttattgtcaaaatgtctttcctgctatag---gaaagatcagaaatcttataagga------------------------------------

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G03260.1 (Glycine max), 5'ss of exon 1
AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgactggctattatttgaaattccatattgtgcttgttttacaagcct--tttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag
    || ||||||||||| ||||||||||| || ||||||||  |||| ||||| || |  ||| ||||||||||||| || ||||| || || |||||||||   | ||||  |      |       |||| | ||| || || | |||    |    ||| |||| ||      || |  |   ||  || ||                                         
TCATGCTCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGATAACATGCTGGCTGAATATTTCGGTACCATCGGATTAATAAAGgtatggagtctgcatcatgcatggcaaccattcaa-attatg-ttatcttattgtcaaaatttcttttctactctaggaaagatcagaaatcttataaggaa-----------------------------------

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G50300.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGAGCCCCTTCAAATGGCTCTGTCTATGTTTGTAACTTGCCTCATGGAACTGATGAAACTATGTTGGCTGAATATTTTGGCACCATTGGGTTGATAAAGgtagttaatctgactggctattatttgaaattccatattgtgcttgttttacaagccttttgttttgtaaaacttgataagttcaaatgctcatccttttcttccattttctttctcattcacgttcctttgtag
 |||   ||| | ||||| || ||||| ||||  ||  | ||    |||||||| || | |||||||||||| |||||||| |||||||||||| | ||||||    || || |  | || || |||    |   | || ||      || ||| |      |||| ||   |   | |  ||| | |      | |||| ||| |  ||  || |                   
TGGATATCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTTGGCTGACTATTTTGGGACCATTGGGTTGCTTAAGgtatggtat-tggccaggtactaattgttgcttt-tgttttgacgtcattgcaatc------ttttataggtcactagattttcgagtttcttacatttttttctacattgcttttag-----------------