1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTATTTTGCTTAAAATTTTAGTAGAATATTCTATTCAACGCGGATAACACTTTTACGGAGCTCGATTTTAGTTTCAACGGTTAGATTTTTGAATATGAGgtagagtggtttaacccagaaaactttgatttaatttttttttttgaaaaaaaaatttatattgtgtttttgggagataatagatgttatttatattatt...
species | Vitis vinifera |
transcript | Vv01s0010g01380.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTTTACGGAGCTCGATTTTAGTTTCAACGGTTAGATTTTTGAATATGAG GTGAACTTAACCCATCAAATGGCACGTGTGATGGGCAAAGAAGAGCTAAGAEST: gi|352777297|gb|FQ473931.1|FQ473931
genomic: CTTTTACGGAGCTCGATTTTAGTTTCAACGGTTAGATTTTTGAATATGAGgtagagtggt ... tcaatcatagGTGAACTTAACCCATCAAATGGCACGTGTGATGGGCAAAGAAGAGCTAAGA
EST: CTTTTACGGAGCTCGATTTTAGTTTCAACGGTTAGATTTTTGAATATGAG GTGAACTTAACCCATCAAATGGCACGTGTGATGGGCAAAGAAGAGCTAAGA
genomic: CTTTTACGGAGCTCGATTTTAGTTTCAACGGTTAGATTTTTGAATATGAGgtagagtggt ... tcaatcatagGTGAACTTAACCCATCAAATGGCACGTGTGATGGGCAAAGAAGAGCTAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTATTTTGCTTAAAATTTTAGTAGAATATTCTATTCAACGCGGATAACACTTTTACGGAGCTCGATTTTAGTTTCAACGGTTAGATTTTTGAATATGAGgtagagtggtttaacccagaaaactttgatttaatttttttttttgaaaaaaaaatttatattgtgtttttgggagataatagatgttatttatattatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagataa