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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTTGGAACGTTTGACTGGTGTTTTCACTCAGAAGATCCACGATCTCATTGGAATTCACAGTGATGTTCCTGCCCCAGACATGGGAACCAATTCACAGgttttccattcctgaatctaatatgtagtgtgtcctttccaggaaaaaaaatattgactctttgacctttctttaacttgaattttactttccttactctcgatttggacag

Basic information

species Vitis vinifera
transcript Vv00s1491g00010.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G41310.1 (Glycine max), 5'ss of exon 3
TGAGTTGGAACGTTTGACTGGTGTTTTCACTCAGAAGATCCACGATCTCATTGGAATTCACAGTGATGTTCCTGCCCCAGACATGGGAACCAATTCACAGgtt---------ttccattcctgaatctaatatgtagtgtgtcc----tttccaggaaaaaaaatat-tgactctttgacctttctttaacttgaattttactttccttactctcgatttggacag
 ||||| |||||| | ||| | |||||||| || ||||| || ||||||||||| ||||| || |||||||||||||| ||||||||||| ||||||||||||         ||  |||||   |  |||| | | || ||| |    ||   | | |||  || || |  |  ||| |       ||  ||   |||||  ||   ||||| |  ||||  ||||
CGAGTTAGAACGTCTAACTCGCGTTTTCACCCAAAAGATTCATGATCTCATTGGTATTCAGAGAGATGTTCCTGCCCCTGACATGGGAACTAATTCACAGgttctgatttaattatattcccttacttaatttctggtttgtgcccatttcttatgtaaaccaacatctagcagtttcattcactatt--ctatcattttcattcgtttactatttatttc-acag

upper sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G05460.1 (Glycine max), 5'ss of exon 3
TGAGTTGGAACGTTTGACTGGTGTTTTCACTCAGAAGATCCACGATCTCATTGGAATTCACAGTGATGTTCCTGCCCCAGACATGGGAACCAATTCACAGgttttccattcctgaatctaatatgtagtgtgtcctttccaggaaaaaaaatattgactctttgacctttctttaacttgaattttactttccttactctcgatttggacag
|||||| |||||| | ||| | |||||||| || ||||| || ||||||||||| ||||| || |||||||||||||| || |||||||| ||| | |||||  |  ||| |  ||  || ||  |       | |||     | ||| ||||   | ||  |    ||  | || | |   || |  ||     ||| | | ||   ||||
TGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCATTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGgtactg-atttcacaacatagtactttcctgtccatttattttataaataatagc-attcaatagt-ttcatatatcct---ttctcattggtccactgttgtttc--acag

upper sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G15740.1 (Glycine max), 5'ss of exon 4
TGAGTTGGAACGTTTGACTGGTGTTTTCACTCAGAAGATCCACGATCTCATTGGAATTCACAGTGATGTTCCTGCCCCAGACATGGGAACCAATTCACAGgttttccattcctgaatctaatatgtagtgtgtcctttccaggaaaaaaaatattgactctttgacctttctttaacttgaattttactttccttactctcgatttggacag
|||||| |||||| | ||| | |||||||| || ||||| || |||||||||||  |||| || |||||||||||||| || |||||||| ||| | |||||  |  ||| |  ||   | ||  |  | ||||| ||      |   ||| | |  |  |      |||| |        ||  |   ||  |    | |  |||| ||||
TGAGTTAGAACGTCTAACTCGGGTTTTCACCCAAAAGATTCATGATCTCATTGGCGTTCAGAGGGATGTTCCTGCCCCTGATATGGGAACTAATGCTCAGgtactg-atttcacaacacagtacatt-tctgtccatttattttatctaaaaaatagcattcaatagtttcat------atatcctttcttattggtccactgtttg-acag