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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCATTGTGCTTTTGCCTTTACTATGCAAGTGTGAAGACACCTTCACATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAAgtacgtatcttaattgatctcttccatgcatactttctatatatcttagatggggtgatgataatatgttgaatcag

Basic information

species Vitis vinifera
transcript Vv00s1455g00010.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1455g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G05430.1 (Glycine max), 5'ss of exon 2
TGTTTCATTGTGCTTTTGCCTTTACTATGCAAGTGTGAAGACACCTTCACATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAAgtacg-----tatcttaattgatctcttccatgca-tactttctatatatcttagatggggtgatgataatatgttgaatcag------------------
||| || |  | |||||  ||   || || |  |   | ||| | |||||  ||||  | |||||||||||||| |||||||||||||  |||| |||||||| |     | |  ||| | | || |  ||||   || |   |||| ||  |   ||    | ||     || | | ||                     
TGTGTCTTACTACTTTTAGCTGCTCTGTGTAGCTCACAGGACTCTTTCACTGACTCGAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAATCCAAgtatgagcctttttctaactaa-ctatggcatgtgctagtacatataaattgtttgtgccaagctgtctgaatttaggatatacacccttgtttgaatgtt

upper sequence: Vv00s1455g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G15710.2 (Glycine max), 5'ss of exon 1
TGTTTCATTGTGCTTTTGCCTTTACTATGCAAGTGTGAAGACACCTTCACATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAAgtacgtatcttaattgatct--cttccatgcatactt-tctatatatcttagatggggtgatgataatatgttg--aatcag------------------
||| |  |  | ||||| |||  | | || |  |   | ||| | || ||  ||||  | |||||||||||||| |||||||||||||  |||| |||||||| |   |||  |  | ||  ||        | ||  |  |||||  ||   ||     |  | | |   |||   |  ||                  
TGTGTTGTACTTCTTTTACCTGCATTGTGTAGCTCACAGGACTCTTTTACTGACTCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAATCCAAgtatgagcctttttctaactaactatggaatgtgctagtacatataaattgtttgtaccaaacacatttgattgctgactaggcatttaggatatacacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110357136|gb|EC920473.1|EC920473
EST:     ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAA                         CTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
genomic: ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAAgtacgtatct ... gttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
EST: gi|161709565|gb|FC061395.1|FC061395
EST:     ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAA                         CTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
genomic: ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAAgtacgtatct ... gttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
EST: gi|110357223|gb|EC920610.1|EC920610
EST:     ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAA                         CTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
genomic: ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAAgtacgtatct ... gttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG