1 5' 3' |
GAGAACACGAATCTCGCAAATTACACCTCGATTTCGAAGGCTCCAAAATGTTTGGACGCAGAAGATTTCTATCTTTCCCTTTGGTGATCGGAGCAGTCGTgttagtttctcttccctcaactcttactctcttctttctgtggatttaacatatttagccagggagccaattagtgtgcagttcggaattggtttactag...
species | Vitis vinifera |
transcript | Vv00s1328g00010.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTGGACGCAGAAGATTTCTATCTTTCCCTTTGGTGATCGGAGCAGTCGT GATTGGAGTTGTTTCTGGGAAGGCAATATTTGGACCCCCACTTGATGAATAEST: gi|71868305|gb|DT017360.1|DT017360
genomic: TTTGGACGCAGAAGATTTCTATCTTTCCCTTTGGTGATCGGAGCAGTCGTgttagtttct ... tgtcttgtagGATTGGAGTTGTTTCTGGGAAGGCAATATTTGGACCCCCACTTGATGAATA
EST: TTTGGACGCAGAAGATTTCTATCTTTCCCTTTGGTGATCGGAGCAGTCGT GATTGGAGTTGTTTCTGGGAAGGCAATATTTGGACCCCCACTTGATGAATA
genomic: TTTGGACGCAGAAGATTTCTATCTTTCCCTTTGGTGATCGGAGCAGTCGTgttagtttct ... tgtcttgtagGATTGGAGTTGTTTCTGGGAAGGCAATATTTGGACCCCCACTTGATGAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAACACGAATCTCGCAAATTACACCTCGATTTCGAAGGCTCCAAAATGTTTGGACGCAGAAGATTTCTATCTTTCCCTTTGGTGATCGGAGCAGTCGTgttagtttctcttccctcaactcttactctcttctttctgtggatttaacatatttagccagggagccaattagtgtgcagttcggaattggtttactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcttc