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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACAGTTACAGATGTGCAACCAAGCTCTAGCTCAGGAAGAAAGACAGAGGAAGTATCTGGAAATTCAACTTTCTGAATCTAAAACTTGCTTTGAGAATgtgttttctgagtgtcaggatgcaaaatcaaagatcgaacacttgagcattcaaagagataaagaaattgcagctctgagaaattcactaagcacaaaagaaacaatctacaaagaagcagatttcag

Basic information

species Vitis vinifera
transcript Vv00s0779g00020.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0779g00020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G33180.1 (Glycine max), 5'ss of exon 1
AAGACAGTTACAGATGTGCAACCAAGCTCTAGCTCAGGAAGAAAGACAGAGGAAGTATCTGGAAATTCAACTTTCTGAATCTAAAACTTGCTTTGAGAATgtgttttctgagtgtcaggatgcaaaatca-aagatcgaacacttgagcattcaaagagataaagaaattgcagctctgagaaattcactaagcacaaaagaaacaatctacaaagaagcagatttcag
| |    | | | |  |  |    || |  ||   || ||||| ||  | || ||| |    ||||  |  || ||  ||   | | || ||    |||    || |  || | |||      ||||| | | ||||    ||   ||  | || |     ||  ||      ||||    | |      ||||   |  ||||   |||  ||               
ATGTGCATGAAAAACTTATAGATCAGTTTAAGGCAAGTAAGAAGGA--GTGGGAGT-TGGAAAAATCTACATTGCTTGAT--GAGATTTCCTCATTGAAGTCTTTgttagactatcatataataaaatgacatgatctgcaacaccagt-tacagatgtgcaaccaagcccttgctcatgaaga------aagcctga--gaaagcgtctggaa---------------