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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtatgcctctgtatctttcaggctttttcgatgtatcggtgtgcattattcttgtttattcccttgtgtggagggttgatagggtttttgttttcgatgt...

Basic information

species Vitis vinifera
transcript Vv00s0704g00010.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0704g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os03g63520.1 (Oryza sativa), 5'ss of exon 1
AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtatgcctctgtatctttcaggctttttcgatgtatcggtgtgcattattcttgtttattcccttgtgtggagggttgatagggtttttgttttcgatgt------------------------
 ||||| || || || || || ||||||  ||||||||| |||||||| ||||| || |||||||||||  ||||||||||| |||| ||| | ||||| || |  |||| | ||| ||   ||    |      ||  | | ||| |||||  | | |  ||| |    |  | ||| | | ||   ||   | ||||                         
GATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGgtctctctctctctctctctctctccgcccgcccctc--tttacatgattctactctct--cctcgatctggtgcttgtttgagtgcctgcgct-gatggcctaatgccctccttgcctcgcag

upper sequence: Vv00s0704g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G082976_T01 (Zea mays), 5'ss of exon 1
AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtat--gcctctgtatctttc-----------aggctttttcgatgtatcggtgtgcattat-tcttgtttattcccttgtgtggagggttgatagggtttttgttttcgatgt----
 ||||| || || || || |||||||||  ||||||||| |||||||| ||||| || |||||||||||  ||||||||||| |||| ||| | ||||| |||   || ||    || |||           ||  | ||     |     ||   ||  || |||  | |  ||| || | | | | |    | ||    | |     | |||    
GATGGCGCAGGCGGTGGAGGAATGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGgtaccggcttccccctccttcccatgatcaggagattcttctctcgcccatgtcgccaggatctctaatctcatccttttttttgtgcgcccgttgg---ctggccccggctgtgcag

upper sequence: Vv00s0704g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G112609_T01 (Zea mays), 5'ss of exon 1
AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtat---gcctctgtatctttcaggctttttcgatgtatcggtgtgcattattcttgtttattcccttgtgtggagggttgatagggtttttgttttcgatgt--------------------------------------------------------------
 ||||| || || || || || ||||||  ||||||||| |||||||| ||||| || |||||||||||  ||||||||||| |||| ||| | ||||| |||      |||  |  || ||   || | ||  | | ||  | |   |   |||   |   || ||       | |  |   |   | ||   |||||                                                                  
GATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCTGTCGTCACCACCGTCGGCTGCACCCTCGAAgtaccggctctccctccctctctctctctctctctctctctctctctctctctctctctctctctctctctcccatgactaggaaattcttctctttcgcccctgttgctaggatctctaatttgcgctctttacgtgcgcccgttggctgggccggctgtgcag

upper sequence: Vv00s0704g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G11350.3 (Glycine max), 5'ss of exon 1
AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtatgcctctgtatctttcaggctttttcgatgtatcggtgtgcattattcttgtttattcccttgtgtggagggttgatagggttt--ttgttttcgatgt----
|||||||||||| |||||||||||||| |||||||||||  ||||||| ||||||||||||||||| ||  | |||||||||||||| || || || || |||  || ||   |  |||  ||  | ||  | |   ||| | || | || || |||  |   ||  |||  |  |   | ||||||  |  ||||  || |    
AATGGCTCAAGCGGTTGAAGAATGGTATAAGCAGATGCCTGTCATCACGCGCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATgtaatcccct---ttcttc--gcactctcacttttagggtttccaattttatttttttatgaattcggtgc-gtctgatttgggtttattcttttttaatatctcg

upper sequence: Vv00s0704g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G27600.1 (Glycine max), 5'ss of exon 1
AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtatgcctc--tgtatctttcaggctttttcgatgtatcggtgtgcattattcttgtttattcccttgtgtggagggttgatagggtttttgttttcgatgt
|||||||||||| |||||||||||||| |||||||||||  ||||||| ||||| ||||||||||| ||  | |||||||| ||||| ||||| || || |||  || |  | | || | |   |  |||    || ||  |    ||| ||||  ||||||    ||  |   | |    ||   |   |   |||  |  
AATGGCTCAAGCGGTTGAAGAATGGTATAAGCAGATGCCCGTCATCACGCGCTCCTATCTCACCGCTGCTGTTGTCACCACTATCGGATGCTCCCTTGATgtaaacccccttttttcatcctctcacttttagggtttccattattatt-ttctaatttatttttatgaattcggtgcgtctaatttggatacattcattt-

upper sequence: Vv00s0704g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G21810.1 (Arabidopsis thaliana), 5'ss of exon 1
AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtatg----cctctgtatctttcaggctttttcgatgtatcggtgtgcattattcttgtt--tattcccttgtgtggagggttgatagggtttttgttttcgatgt
 |||||||||||||| ||||| ||||||||||||||||| || || ||||| || |||||||| || ||  | ||||||||| |||| || || ||||| || ||     |||||  || |  | || |||     |  | | | || |||  |||  ||  | || |||||       |  |  | | |||| |||| |  ||| 
TATGGCTCAAGCCGTAGAAGAGTGGTACAAGCAGATGCCGATTATAACCCGGTCGTATCTCACGGCGGCTGTAGTCACCACCGTCGGGTGTTCGCTCGAGgtttgaagttctctgactcatgaaagccttta----gctttgctctg-attgatctgattagtttttccttgaaaaattgaatctttgtgtttctgttatgtatg-

upper sequence: Vv00s0704g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G04860.1 (Arabidopsis thaliana), 5'ss of exon 1
AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtatgcctctgtatctttcaggctttttcgatgtatcggtgtgcattattcttgtttattcccttgtgtggagggttgatagggtttttgttttcgatgt----
 |||||||| || || ||||||||||| || |||||||| || ||||| |||||||||||||| || ||  |  |||||||| |||| || || ||||| ||| |    ||  |       |||| ||||  | |||  | |      ||||     |||| ||    | | || || |||   |  ||||||| | | |    
TATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGATTATCACTCGCTCTTATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATgtacgtgcttgctt-------gcttattcg-cgaatcttttt-tggggttctctgaaattctctaaattag-ggtttcatattctgattgtttttgttttgcag

upper sequence: Vv00s0704g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S68_188V6.2 (Physcomitrella patens), 5'ss of exon 1
AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtatgcctctgtatctttcaggctttttcgatgtatcggtgtgcattattcttgtttattcc-cttgtgtggagggt-tgatagggtttttgttttcgatgt-
 ||||| |||   || || || ||||||||||| ||||| |||||||| ||| ||||||||||     |  |  | |||||    || ||  |||| || ||||  |||  |  | |||   ||||    |  | |  || |  |   ||   || ||  |   |||| | | |  | ||  |  ||| | ||| |   |   
GATGGCGCAACTGGTGGAGGACTGGTACAAGCAAATGCCCATCATCACGCGCACTTATCTCACTTTGTCTGTGCTTACCACTGCTGGATGTGCTCTTGAGgtatttctcctttccattc---ctttacgtagttgtgtgtttcgagggttgaagtctacactgtttgtattgggtctctgccacagttatggttctttgttca

upper sequence: Vv00s0704g00010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S226_55V6.1 (Physcomitrella patens), 5'ss of exon 2
AATGGCTCAAGCCGTTGAAGAATGGTACAAGCAGATGCCAATCATCACCCGCTCTTATCTCACCGCCGCAATCGTCACCACCATCGGTTGCTCTCTCGACgtatgcctctgtatctttcaggctttttcgatgtatcggtgtgcattattcttgtttattcccttgtgtggagggttgatagggtttttgttttcgatgt--
 |||||||||   || || || ||||||||||| ||||| |||||||| ||||| ||||||||     |  |  ||||||||   || ||  || | || |||   |||  | ||| |     ||  | | |  || |   |    | ||       |     |||| | |   ||   |  | | ||   |      ||  
CATGGCTCAACTAGTAGAGGACTGGTACAAGCAAATGCCCATCATCACGCGCTCGTATCTCACTTTGTCTGTGCTCACCACCGCTGGATGTGCTTTGGAGgtac-tctcactttctgtttctattaattgttagatagagttaagatgtttaaacccaggag-ttgtcttgttcgtgtctcagatattccctcgtagcgtag