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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAATCGGGCAATGTCGCCAGGATGACGGCTTCGGCACCGATATAATCATTGTCGGCGCCGGAGTTGCCGGTTCGGCCCTCGCCCACACTCTCGGCAAGgtgactttttgtccctttggttctgtttgcttcgctagaggttttatatcattttattttatttttccttaatggggatttgattgtgtttggtcacaca...

Basic information

species Vitis vinifera
transcript Vv00s0525g00020.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406097|gb|CF211724.1|CF211724
EST:     TTGTCGGCGCCGGAGTTGCCGGTTCCGCCCTCGCCCACACTCTCGGCAAG                         GATGGAAGGCGAGCTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA
genomic: TTGTCGGCGCCGGAGTTGCCGGTTCGGCCCTCGCCCACACTCTCGGCAAGgtgacttttt ... ctgatatcagGATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA
EST: gi|110357257|gb|EC920671.1|EC920671
EST:     TTGTCGGCGCCGGAGTTGCCGGTTCCGCCCTCGCCCACACTCTCGGCAAG                         GATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA
genomic: TTGTCGGCGCCGGAGTTGCCGGTTCGGCCCTCGCCCACACTCTCGGCAAGgtgacttttt ... ctgatatcagGATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA
EST: gi|161718467|gb|FC064799.1|FC064799
EST:     TTGTCGGCGCCGGAGTTGCCGGTTCCGCCCTCGCCCACACTCTCGGCAAG                         GATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA
genomic: TTGTCGGCGCCGGAGTTGCCGGTTCGGCCCTCGCCCACACTCTCGGCAAGgtgacttttt ... ctgatatcagGATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA