Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGCGGAGTCTCCAGCATCTCTTCTTGAAGAAGCAAGCAATCTTCTGTTCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgctcccaaatgacttcagttatactctaattttttttctcaataatttgattcgattaattaatttttccgagggaaacgataatctcgatc...

Basic information

species Vitis vinifera
transcript Vv00s0404g00020.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855930|gb|DT004985.1|DT004985
EST:     TCGTCCGATCTCATATAGTCAACGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|32269051|gb|CD718210.1|CD718210
EST:     TCGTCCGATCTCATATAGTCAACGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351012256|gb|FQ429941.1|FQ429941
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351025607|gb|FQ426621.1|FQ426621
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351034965|gb|FQ458322.1|FQ458322
EST:     TCGTCCGATCTCATATAGTCACCGATTCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|110427829|gb|EC994282.1|EC994282
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCAG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|349812276|gb|FQ406297.1|FQ406297
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351028376|gb|FQ427272.1|FQ427272
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|294966089|gb|GW837456.1|GW837456
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCAG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|30323971|gb|CD007233.1|CD007233
EST:     TCGTCCGATCTCATATAGTCAACGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|110731025|gb|EE108773.1|EE108773
EST:     TCGTCCGATCTCATATAGTCAACGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|46918092|gb|CN547421.1|CN547421
EST:     TTTGATTTCAGCGATCGG                         CCAATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|349808168|gb|FQ403355.1|FQ403355
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|30324440|gb|CD007702.1|CD007702
EST:     TCGTCCGATCTCATATAGTCAACGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|352795533|gb|FQ480121.1|FQ480121
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|352798830|gb|FQ478465.1|FQ478465
EST:     TCGTCCGATCTCATATAGTCACCGACCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351041869|gb|FQ456079.1|FQ456079
EST:     TCGTCCGATCTCATATAGTCACCGACCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|349816879|gb|FQ405005.1|FQ405005
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|161716818|gb|FC069179.1|FC069179
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|349809320|gb|FQ401088.1|FQ401088
EST:     TCGTCCGATCTCATATAGTCACCGACCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|161721740|gb|FC070480.1|FC070480
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|30325099|gb|CD008361.1|CD008361
EST:     TCGTCCGATCTCATATAGTCAACGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|110377794|gb|EC942882.1|EC942882
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|349824711|gb|FQ414569.1|FQ414569
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351030194|gb|FQ432132.1|FQ432132
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351048889|gb|FQ449732.1|FQ449732
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|110380126|gb|EC945370.1|EC945370
EST:     CGTCCGATCTCATATAGTCAACGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: CGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|110391488|gb|EC956466.1|EC956466
EST:     TCGTCCGATCTCATATAGTCAACGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351039382|gb|FQ461249.1|FQ461249
EST:     TCCTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTGGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|33404104|gb|CF209731.1|CF209731
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351056238|gb|FQ453700.1|FQ453700
EST:     TCGTCCGATCTCATATAGTCACCGATTCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|30125760|gb|CB911099.1|CB911099
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|351036835|gb|FQ459357.1|FQ459357
EST:     TCGTCCGATCTCATATAGTCACCGACCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|352786896|gb|FQ481271.1|FQ481271
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTGGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|349822353|gb|FQ412617.1|FQ412617
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|71856971|gb|DT006026.1|DT006026
EST:     CGTCCGATCTCATATAGTCTA-CGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: CGTCCGATCTCATATAGTC-ACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|349810765|gb|FQ403008.1|FQ403008
EST:     TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
EST: gi|161716406|gb|FC068410.1|FC068410
EST:     TCGTCCGATCTCATATAGTCAACGATCCGCCCTTTGATTTCAGCGATCGG                         CCGATATGGATCTATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT
genomic: TCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgc ... tgttttgcagCCGATATGGATATATCTACAATGGACCGTGGACAACTTACTCTACTAGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGAGCGGAGTCTCCAGCATCTCTTCTTGAAGAAGCAAGCAATCTTCTGTTCGTCCGATCTCATATAGTCACCGATCCGCCCTTTGATTTCAGCGATCGGgtttgtctgctcccaaatgacttcagttatactctaattttttttctcaataatttgattcgattaattaatttttccgagggaaacgataatctcgatc

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