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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGGGAATTGAGCTAGTTCCAAGGGATTTTGATATGGATTCTCCATACCCTTTCCAAAAACTTGACGTTATTAGCTTGGTACTAGTGCATAAGgtgatgaacaaactatgctatttgatagaagaatagaacacattgtttcttatcttgtcttacaaataattaaaccattcaataatctggatttaattgcatttctttttcttttcag

Basic information

species Vitis vinifera
transcript Vv00s0388g00080.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0388g00080.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 15
AGGTGGGAATTGAGCTAGTTCCAAGGGATTTTGATATGGATTCTCCATACCCTTTCCAAAAACTTGACGTTATTAGCTTGGTACTAGTGCATAAGgtgatgaacaaactatgctatttgatagaagaatagaacacattgtttcttatcttgtcttacaaataattaaaccattcaataatctggatttaattgcatttctttttcttttcag
  |||||||||||||| |||||||||||||||||||||||||| |||   || || ||||||  |||  || | |||||||| |  || || ||||| |  |||||   ||| |  || ||||                                                                                          
--GTGGGAATTGAGCTTGTTCCAAGGGATTTTGATATGGATTCCCCAATTCCCTTTCAAAAATCTGATATTGTCAGCTTGGTCCCTgttcacaaggtaacaaacaagacatgttgatt-atag------------------------------------------------------------------------------------------

upper sequence: Vv00s0388g00080.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G02770.1 (Glycine max), 5'ss of exon 16
AGGTGGGAATTGAGCTAGTTCCAAGGGATTTTGATATGGATTCTCCATACCCTTTCCAAAAACTTGACGTTATTAGCTTGGTACTAGTGCATAAGgtgatgaacaaactatgctatttgatagaagaatagaacacattgtttcttatcttgtcttacaaataattaaaccattcaataatctggatttaattgcatttctttttcttttcag
  |||||||||||||| |||||||||||||||||||||||||| |||   || || ||||||  |||  || | |||||||| |  || || ||||| |  |||||   ||| |  |               | |  || | |   || ||   ||  |  | ||| ||  | || | | | |  |  ||||     | ||  | | || |||
--GTGGGAATTGAGCTTGTTCCAAGGGATTTTGATATGGATTCCCCAATTCCCTTTCAAAAATCTGATATTGTCAGCTTGGTCCCTGTTCACAAGgtaacaaacaagacatgttgatc--------------ataggttttcttgcatatttctttgaagttgattgaataaatccaaactttatacataatgctcatgctgatacgttgcag