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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGGTTCGAAAACTAGACTTCTTCCCAAAATCCTTTCTCCGTCAACCATGGCTGCCAATTTCTGGACGTCGTCTCACTAgtaagttttaaactcagctaatctgcaaaccctaccttcaatttttttgtttatactttgaattcgaatgtttttgtttttctgtgtatttaccaccatgtgttttgctgatgcag

Basic information

species Vitis vinifera
transcript Vv00s0360g00050.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719540|gb|FC067026.1|FC067026
EST:     TTTCTCCGTCAACCATGGCTGCCAATTTCTGGACGTCGTCTCACTA                         CAAACAACTTCTCGACCAAGAAGAGGTGGATGTGGTGCACCCTCTTGACAA
genomic: TTTCTCCGTCAACCATGGCTGCCAATTTCTGGACGTCGTCTCACTAgtaagtttta ... gctgatgcagCAAACAACTTCTCGACCAAGAAGAGGTGGATGTGGTGCACCCTCTTGACAA
EST: gi|110730965|gb|EE108649.1|EE108649
EST:     ATCCTTTCTCCGTCAACCATGGCTGCCAATTTCTGGACGTCGTCTCACTA                         CAAACAACTTCTCGACCAAGAAGAGGTGGATGTGGTGCACCCTCTTGACAA
genomic: ATCCTTTCTCCGTCAACCATGGCTGCCAATTTCTGGACGTCGTCTCACTAgtaagtttta ... gctgatgcagCAAACAACTTCTCGACCAAGAAGAGGTGGATGTGGTGCACCCTCTTGACAA
EST: gi|110713415|gb|EE089326.1|EE089326
EST:     ATCCTTTCTCCGTCAACCATGGCTGCCAATTTCTGGACGTCGTCTCACTA                         CAAACAACTTCTCGACCAAGAAGAGGTGGATGTGGTGCACCCTCTTGACAA
genomic: ATCCTTTCTCCGTCAACCATGGCTGCCAATTTCTGGACGTCGTCTCACTAgtaagtttta ... gctgatgcagCAAACAACTTCTCGACCAAGAAGAGGTGGATGTGGTGCACCCTCTTGACAA
EST: gi|349814319|gb|FQ398759.1|FQ398759
EST:     ATCCTTTCTCCGTCAACCATGGCTGCCAATTTCTGGACGTCGTCTCACTA                         CAAACAACTTCTCGACCAAGAAGAGGTGGATGTGGTGCACCCTCTTGACAA
genomic: ATCCTTTCTCCGTCAACCATGGCTGCCAATTTCTGGACGTCGTCTCACTAgtaagtttta ... gctgatgcagCAAACAACTTCTCGACCAAGAAGAGGTGGATGTGGTGCACCCTCTTGACAA