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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGGAGGAGCTCTTGCTGGTCTCTTTTTTCTGCTACTTCCGGTTTTCTTGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtccttctttctgggtgtttttttttttttttttttgctttcttgtgttaccgattctttttttggttttatttatttattattattattgatttt...

Basic information

species Vitis vinifera
transcript Vv00s0313g00030.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38516635|gb|CF983810.1|CF983810
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|34549653|gb|CF517885.1|CF517885
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|71858527|gb|DT007582.1|DT007582
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|37183648|gb|CF603002.1|CF603002
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|30128462|gb|CB913801.1|CB913801
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|352764443|gb|FQ472800.1|FQ472800
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|161705429|gb|FC057048.1|FC057048
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|161708098|gb|FC056489.1|FC056489
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|71859639|gb|DT008694.1|DT008694
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|161716901|gb|FC068123.1|FC068123
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|110724909|gb|EE101147.1|EE101147
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|110710320|gb|EE086550.1|EE086550
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|161714330|gb|FC062631.1|FC062631
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|33409871|gb|CF215498.1|CF215498
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|71855588|gb|DT004643.1|DT004643
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|351032719|gb|FQ462433.1|FQ462433
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|30136929|gb|CB922267.1|CB922267
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|352782495|gb|FQ470398.1|FQ470398
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|352794755|gb|FQ475253.1|FQ475253
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCC                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|352785495|gb|FQ477709.1|FQ477709
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAGTGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|351016529|gb|FQ423956.1|FQ423956
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|351018711|gb|FQ425613.1|FQ425613
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|71857101|gb|DT006156.1|DT006156
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|351013796|gb|FQ433948.1|FQ433948
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|161718121|gb|FC068890.1|FC068890
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|71857389|gb|DT006444.1|DT006444
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|352764822|gb|FQ471882.1|FQ471882
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCATTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
EST: gi|352773927|gb|FQ473059.1|FQ473059
EST:     TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCG                         GAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA
genomic: TGCCCAGTCTCTTCAGTCCATTGGGGCACGCTTCTCCTTCCGTTTTCTCGgtgcgtcctt ... ccttgtgcagGAATGGAATGCTCCAAAACCAAGGCATTCACGTCTACTCAAAAGTGTTTTA