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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTCATTGTGCTCTTGCCTGTGCTATGCAAGTGTGAAGACGCCTTCACATACTCACGGGCAACATATTATGGCACCCCTGATGGCTTAGGGACTCCAAgtacgtatcttaattgatctcttccatgcatactttgtatatatcatagatggggtaatgatcatatgttgaatcag

Basic information

species Vitis vinifera
transcript Vv00s0309g00050.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0309g00050.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G15680.1 (Glycine max), 5'ss of exon 1
TGTGTCATTGTGCTCTTGCCTGTGCTATGCAAGTGTGAAGACGCCTTCACATACTCACGGGCAACATATTATGGCACCCCTGATGGCTTAGGGACTCCAAgtacgtatcttaattgatctcttcc-----atgcatactttgtatatatcatagatggggtaatgatcatatgttgaatcag----------------------------------------------
||||| ||  |||| || ||||  ||||| || ||  | ||    |||||  | ||| | ||||| |||||||| |||||||||||||| ||||||||||||| ||   |  |   ||  ||||      ||  || | |    | |    ||||  |  |  |  | | | ||  |||  |                                              
TGTGTGATATTGCTGTTCCCTGCACTATGTAACTGCCAGGAATATTTCACCAAATCAAGAGCAACCTATTATGGTACCCCTGATGGCTTCGGGACTCCAAgtatgtgcttgtaaaaattacttctgaaagatatatgcatgccttttcatttagaatgctttttatttagaagtaaaatgtgtagtatcacataacaaattggaattggcattatttatatatttcag

upper sequence: Vv00s0309g00050.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G05390.1 (Glycine max), 5'ss of exon 1
TGTGTCATTGTGCTCTTGCCTGTGCTATGCAAGTGTGAAGACGCCTTCACATACTCACGGGCAACATATTATGGCACCCCTGATGGCTTAGGGACTCCAAgtacgtatcttaattgatctcttccatgcatactttgtatatatcatagatgggg-------taatgatcatatgttgaatcag------------------------------------------------------
||||| ||  |||| || ||||  || || || ||  | ||    |||||  | ||| | ||||| |||||||| |||||||||||||  ||||||||||||| ||   |   ||||    |   |  |  | |  || ||  | | |||||  |        | | |  ||   ||  || ||                                                      
TGTGTGATATTGCTGTTCCCTGCACTGTGTAACTGCCAGGAATATTTCACCAAATCAAGAGCAACCTATTATGGTACCCCTGATGGCTACGGGACTCCAAgtatgtgcttgttttgaaaattg--aaactaaataagtttactttaaagatgcaggctttttcatttagaatgctttttattagaagtaaaatgtgcagtatcacataacaaattgctattatttatatatatttcag