Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCATTTAGGCTAATTGGAGTTGGATTGTCAGTTTGGACTGTTGCTGCAGTTGGCTGTGGTTTTTCATTTAATTTCTGGTCCATTACAATCTGTCGCATgtaagttgcctaattgcactactttaaaatgtccacttacgacataagaatttgtatgtctgtttcagtagttaaaatgcttttatcattccttttag

Basic information

species Vitis vinifera
transcript Vv00s0282g00040.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 5'ss of exon 3
ACCCATTTAGGCTAATTGGAGTTGGATTGTCAGTTTGGACTGTTGCTGCAGTTGGCTGTGGTTTTTCATTTAATTTCTGGTCCATTACAATCTGTCGCATgtaagttgccta--attgc-----actactttaaaatgtccacttacgacataaga--atttgtatgtctgtttcagtagttaaaatgcttttatcattcct-tttag
| || || ||||| ||||| |||||||| | ||| |||||| ||||  ||| ||| ||||| |  |||||| |||||||||| ||||| || || |||||||||||  | |   ||||      |  | || |   |    |  |   || ||| |  | |  ||      |      |   | ||| ||   || |||  |  ||||
ATCCTTTCAGGCTTATTGGTGTTGGATTATTAGTCTGGACTATTGCAACAGCTGGTTGTGGGTGCTCATTTGATTTCTGGTCAATTACTATATGCCGCATgtaagtaccttgtcattgtgaataatcaattcatgtttcagatctgttacttaaaataaatcttactctgataatgacacgaacaattctccaattattgttacttag

upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G32670.1 (Glycine max), 5'ss of exon 4
ACCCATTTAGGCTAATTGGAGTTGGATTGTCAGTTTGGACTGTTGCTGCAGTTGGCTGTGGTTTTTCATTTAATTTCTGGTCCATTACAATCTGTCGCATgtaagttgcctaattgcactactttaaaatgtccacttacg-------------acataagaatttg-tatgtctgtttcagtag--ttaaaatgcttttatcattccttttag
|||||||||| || || || ||||| ||||||||||||||| ||||  |  |  | ||||| ||||| |||||||||||||||||| ||||||||||||||||||| | ||||||       || ||  | | || ||  |             ||| ||| |     |||     |||   ||   || | || ||||    ||||  | |||
ACCCATTTAGACTTATAGGTGTTGGGTTGTCAGTTTGGACTCTTGCAACCCTATGTTGTGGATTTTCTTTTAATTTCTGGTCCATTTCAATCTGTCGCATgtaagtggtctaattctttattttcaagttatgcaattttggttgtgcagttaaacagaagcacacaatataataattttcttattcttcatatcctttcgatattctctatag

upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G06660.1 (Glycine max), 5'ss of exon 4
ACCCATTTAGGCTAATTGGAGTTGGATTGTCAGTTTGGACTGTTGCTGCAGTTGGCTGTGGTTTTTCATTTAATTTCTGGTCCATTACAATCTGTCGCATgtaagttgcctaattgc-----------actactttaaaatgtccactta--cgacataagaatttgtatgtctgtttcagtagttaaaatgcttttatcattccttttag-------------------
|  | | ||||        | |||||||  ||||||||||| ||||  |  |  |  |||  ||||| |||||||||||||||||| | ||||||||||||||||| | ||| ||             |  | |||    ||| || |||  |  ||  | ||  | ||    | ||    |  || | || |||| | |||||  | |||                   
AGACTTATAGGTGTTGGATACTTGGATTACCAGTTTGGACTCTTGCAACCCTATGTAGTGAATTTTCTTTTAATTTCTGGTCCATTTCGATCTGTCGCATgtaagtggtctatttatttttcaagttaagcaattttggttgtgcagttaaacagcagtacaaaatataataattttcttatttttcatatcctttcaacattctctataggctagtcggtgttggtgag

upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G06880.1 (Glycine max), 5'ss of exon 4
ACCCATTTAGGCTAATTGGAGTTGGATTGTCAGTTTGGACTGTTGCTGCAGTTGGCTGTGGTTTTTCATTTAATTTCTGGTCCATTACAATCTGTCGCATgtaagttgcctaattgcactactttaaaatgtccacttacgacataaga---atttgta-tgtctgtttcagtagttaaaatgcttttatcatt--ccttttag------------
           ||||||||||| ||||| |||||||||||  ||||  |  |  | |||||||| || || ||||||||||||||| || ||||||||||||||||  | | | |    ||  || || | |    ||    |||   |   |||  || |   || |  |  | |    ||  |||| || ||   || ||              
----------ACTAATTGGAGTGGGATTATCAGTTTGGACCCTTGCAACCTTATGTTGTGGTTTCTCTTTCAATTTCTGGTCCATTGCAGTCTGTCGCATgtaagtgtcttcagttattta--ttgaactctatggtttttgcattgaatacattcatagtacatgatgtaagaatcttcatatttttttccttatactgttgtatttttctacag

upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G30370.1 (Glycine max), 5'ss of exon 4
ACCCATTTAGGCTAATTGGAGTTGGATTGTCAGTTTGGACTGTTGCTGCAGTTGGCTGTGGTTTTTCATTTAATTTCTGGTCCATTACAATCTGTCGCATgtaagttgcctaattgcactactttaaaatgtccacttacgacataagaatttgtatgtctgtttcagtagttaaaatgcttttatcattccttttag------------------------
|||||||||| || |||||||| ||||| |||||||||||  ||||  |  |  | ||||| || || || ||||||||||||||| || ||||||||||||||||  | | | |    ||  || || | |    ||  | |||   |   |  |    |  | ||  |  ||| |  || | ||  ||  ||||                          
ACCCATTTAGACTTATTGGAGTGGGATTATCAGTTTGGACCCTTGCAACCTTATGTTGTGGATTCTCTTTCAATTTCTGGTCCATTGCAGTCTGTCGCATgtaagtgtcttcagttattta--ttgaactctatggttttggcattgaa---tacaaacatagtacatgatgtaagaacctgtcatatttttttttccttatactgttgtatttttatacag

upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G64500.1 (Arabidopsis thaliana), 5'ss of exon 4
ACCCATTTAGGCTAATTGGAGTTGGATTGTCAGTTTGGACTGTTGCTGCAGTTGGCTGTGGTTTTTCATTTAATTTCTGGTCCATTACAATCTGTCGCATgtaagttgcctaattgcactactttaaaatgtccacttacgacataagaatttgtatgtctgtttcagtagttaaaatgcttttatcattccttttag
| || ||||| || || |||||||| |||||| | |||||| | ||||   ||||||| ||| |||| ||| |||| |||||||| |||||||||||||||||||| |  ||  |   | | | |    | ||   ||      | | ||| | ||  |||       | |||    | | ||| |||     || ||
ATCCGTTTAGACTTATCGGAGTTGGGTTGTCAATCTGGACTCTCGCTGTGATTGGCTGCGGTCTTTCGTTTGATTTTTGGTCCATCACAATCTGTCGCATgtaagt-gtttagatcttccattatttcttttcatattttattttcaaaatctatacatct-------tcgttt---tacatttctcaccttattcag