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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGCTATGGAGAGGTTCCCTCAGAAAATTTCTGTCGCAGTTTTCGTTTCTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAGgtatgctctctcttaaactcttttcatggacaaaaaggatgtttccatttcagcctttctcgagtagacagctgaagagggcctagaattatgaaaattt...

Basic information

species Vitis vinifera
transcript Vv00s0253g00150.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26264237|gb|CA815300.1|CA815300
EST:     CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAG                         CTTCACCAGAGACGTCAGGGTGCTTCCAAGGATACGCAGTACACGTTCGAT
genomic: CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAGgtatgctctc ... gggattacagCTTCACCAGAGACGTCAGGGTGCCTCCAAGGATACGCAGTACACGTTCGAT
EST: gi|26266280|gb|CA817343.1|CA817343
EST:     CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCCCTGTTTATCAAGAG                         CTTCACCAGAGACGTCAGGGTGCTTCCAAGGATACGCAGTACACGTTCGAT
genomic: CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAGgtatgctctc ... gggattacagCTTCACCAGAGACGTCAGGGTGCCTCCAAGGATACGCAGTACACGTTCGAT
EST: gi|26264220|gb|CA815283.1|CA815283
EST:     CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAG                         CTTCACCAGAGACGTCAGGGTGCTTCCAAGGATACGCAGTACACGTTCGAT
genomic: CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAGgtatgctctc ... gggattacagCTTCACCAGAGACGTCAGGGTGCCTCCAAGGATACGCAGTACACGTTCGAT
EST: gi|26264297|gb|CA815360.1|CA815360
EST:     CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAG                         CTTCACCAGAGACGTCAGGGTGCTTCCAAGGATACGCAGTACACGTTCGAT
genomic: CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAGgtatgctctc ... gggattacagCTTCACCAGAGACGTCAGGGTGCCTCCAAGGATACGCAGTACACGTTCGAT
EST: gi|26266208|gb|CA817271.1|CA817271
EST:     CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAG                         CTTCACCAGAGACGTCAGGGTGCTTCCAAGGATACGCAGTACACGTTCGAT
genomic: CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAGgtatgctctc ... gggattacagCTTCACCAGAGACGTCAGGGTGCCTCCAAGGATACGCAGTACACGTTCGAT
EST: gi|26264636|gb|CA815699.1|CA815699
EST:     CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAG                         CTTCACCAGAGACGTCAGGGTGCTTCCAAGGATACGCAGTACACGTTCGAT
genomic: CTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAGgtatgctctc ... gggattacagCTTCACCAGAGACGTCAGGGTGCCTCCAAGGATACGCAGTACACGTTCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTGCTATGGAGAGGTTCCCTCAGAAAATTTCTGTCGCAGTTTTCGTTTCTGCTTATATGCCGGGTCCTGATTTCAATCTTTCCACTGTTTATCAAGAGgtatgctctctcttaaactcttttcatggacaaaaaggatgtttccatttcagcctttctcgagtagacagctgaagagggcctagaattatgaaaattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa