Sequence
atgc intronic sequence ATGC exonic sequenceAGGCCGCCCTCCACATGCACTGGTTACTTTTGGATTTGGTGGAAAACTCATAGTAATGAAAGATAAGAGTTCCCTCATGGACTCATCATATGTAAGCCAGgttagcctggagctcttctctcttctctctatggattttcttatcctttgtttggttgtcaagaaaactggtccaataaaggaagaaaataaattttaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G41790.1 (Glycine max), 5'ss of exon 5
---AGGCCGCCCTCCACATGCACTGGTTACTTTTGGATTTGGTGGAAAACTCATAGTAATGAAAGATAAGAGTTCCCTCATGGACTCATCATATGTAAGCCAGgttagcctggagctcttctctcttctctctatggattttcttatcctttgtttggttgtcaagaa------aactggtccaataaaggaagaaaataaattttaaa---------------------------------------------------------
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AGCTGGGCGTCCTTCTCATGCTCTGGTAACTTTTGGATTTGGGGGAAAACTCATCATAATGAAAGATCCTAAT---CTTTTGAGCTCATCATATGGAAGCCAGgttaat-------tcttgattcctcatttta-gtttgatcttatactttatctggtttctgaaaggctttgagtttgctcaatattgtttcctttttactgtctgctttcctaggagtgatttatcaaaatcattaacattgtatattcatttatatctgaag
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G03590.1 (Glycine max), 5'ss of exon 6
---AGGCCGCCCTCCACATGCACTGGTTACTTTTGGATTTGGTGGAAAACTCATAGTAATGAAAGATAAGAGTTCCCTCATGGACTCATCATATGTAAGCCAGgttagcctggagctcttctctcttctctctatggattttcttatcctttgtttggttgtcaagaaaactggtccaataaaggaagaaaataaattttaaa---------------------------------------------------------
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AGCTGGACGTCCTTCTCATGCTTTGGTAACTTTTGGATTTGGGGGAAAACTCATCATAATGAAAGATCCTAAT---CTTTTGAGCTCATCATATGGAAGCCAGgttaattcttgattcctcgttttagttttgattttatgctttatctggtttccgaaaggctttgaggttgctc-aatattgtttcctttttatcgtctactttcttatgagtgatttatcaaaatgattaacactgtatattcatttatatctgaag
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G03580.1 (Glycine max), 5'ss of exon 6
---AGGCCGCCCTCCACATGCACTGGTTACTTTTGGATTTGGTGGAAAACTCATAGTAATGAAAGATAAGAGTTCCCTCATGGACTCATCATATGTAAGCCAGgttagcctggagctcttctctcttctctctatggattttcttatcctttgtttggttgtcaagaaaactggtccaataaaggaagaaaataaattttaaa---------------------------------------------------------
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AGCTGGACGTCCTTCTCATGCTTTGGTAACTTTTGGATTTGGGGGAAAACTCATCATAATGAAAGATCCTAAT---CTTTTGAGCTCATCATACGGAAGCCAGgttaattcttgattcctcatttgagttttgattttttgctttatctggtttccgaaaggctttgaggttgctc-aatattgtttcctttttatcgtctactttcttatgagtgatttatcaaaatgattaacactgtaaattcatttatatctgaag
upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G41800.1 (Glycine max), 5'ss of exon 3
---AGGCCGCCCTCCACATGCACTGGTTACTTTTGGATTTGGTGGAAAACTCATAGTAATGAAAGATAAGAGTTCCCTCATGGACTCATCATATGTAAGCCAGgttagcctggagctcttctctcttctctctatggattttcttatcctttgtttggttgtcaagaaaactggtccaataaaggaagaaaataaattttaaa---------------------------------------------------------
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AGCTGGGCGTCCTTCTCATGCCCTGGTAACTTTTGGATTTGGGGGGAAACTCATCATAATGAAAGATCCTAAT---CTTTTGAGCTCATCATATGGACGCCAGgttaattcttgattcctcattttagttttgatcttatgctttatctggtttccgaaaggcgttgaggttgctc-agtattgtttcctttttactgtctactttcctaggagtgatttatcaaaatgattaacattgtatattcatttatatctgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71856033|gb|DT005088.1|DT005088EST: TAGTAATGAAAGATAAGAGTTCCCTCATGGACTCATCATATGTAAGCCAG GATCCTGTGAAGGGCTCAATCTCTGTTCTCAACCTGACGGAAGTTGTCACA
genomic: TAGTAATGAAAGATAAGAGTTCCCTCATGGACTCATCATATGTAAGCCAGgttagcctgg ... ctatgtgaagGATCCTGTGAAGGGCTCAATCTCTGTTCTCAACCTGACGGAAGTTGTCACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCCGCCCTCCACATGCACTGGTTACTTTTGGATTTGGTGGAAAACTCATAGTAATGAAAGATAAGAGTTCCCTCATGGACTCATCATATGTAAGCCAGgttagcctggagctcttctctcttctctctatggattttcttatcctttgtttggttgtcaagaaaactggtccaataaaggaagaaaataaattttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaag