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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACTTATACTCTTACTTTGCTTCCTGGCCATTCTGCACAGCACTTGGGCTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgctattttgacagtaaatgaaatatagattgggcagatgataaatccgatcaaattgggttaaggttctgttgaatgggtattgttttctttta...

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33409277|gb|CF214904.1|CF214904
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGGAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|110390025|gb|EC954908.1|EC954908
EST:     GCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: GCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351013592|gb|FQ429733.1|FQ429733
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|352781104|gb|FQ466417.1|FQ466417
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351023886|gb|FQ423309.1|FQ423309
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351049118|gb|FQ428982.1|FQ428982
EST:     CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG                         TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351036343|gb|FQ458718.1|FQ458718
EST:     CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG                         TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|110692196|gb|EE071162.1|EE071162
EST:     CCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|29785300|gb|CB342168.2|CB342168
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|349827710|gb|FQ422578.1|FQ422578
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|27755408|gb|CB036163.1|CB036163
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|71859561|gb|DT008616.1|DT008616
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351049355|gb|FQ429098.1|FQ429098
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|71861897|gb|DT010952.1|DT010952
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351046382|gb|FQ452998.1|FQ452998
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|71857747|gb|DT006802.1|DT006802
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|30251568|gb|CB969301.1|CB969301
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG                         T
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: gi|30251568|gb|CB969301.1|CB969301
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG                         T
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: gi|30251568|gb|CB969301.1|CB969301
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG                         T
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: gi|18459105|gb|BM437383.1|BM437383
EST:     CCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|32250126|gb|CD715945.1|CD715945
EST:     GCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: GCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|349830529|gb|FQ416839.1|FQ416839
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|110385291|gb|EC949801.1|EC949801
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|71856656|gb|DT005711.1|DT005711
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|352794077|gb|FQ479319.1|FQ479319
EST:     CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG                         TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351029614|gb|FQ427454.1|FQ427454
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351029308|gb|FQ436702.1|FQ436702
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|352769573|gb|FQ468501.1|FQ468501
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|349832657|gb|FQ422015.1|FQ422015
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|30251605|gb|CB969338.1|CB969338
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG                         T
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: gi|30251605|gb|CB969338.1|CB969338
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG                         T
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: gi|30251605|gb|CB969338.1|CB969338
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGG                         T
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAA-Ggtagttgcta ... atcaatgtag-
EST: gi|294965073|gb|GW838876.1|GW838876
EST:     CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAG                         TGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|110698273|gb|EE075615.1|EE075615
EST:     CCAACATCATAG                         CGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351032478|gb|FQ458843.1|FQ458843
EST:     CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG                         TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
EST: gi|351054831|gb|FQ462861.1|FQ462861
EST:     CTTCCACTCCAAAGGCCACACCCCATCTCACCGCCAACCCAACATCAAAG                         TGACATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC
genomic: CTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgcta ... atcaatgtagTGGCATTTGTCTGAAAATTCCCAACTTAGTAGCAGAGTTAGTTCAAGAGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGACTTATACTCTTACTTTGCTTCCTGGCCATTCTGCACAGCACTTGGGCTTCCACTCCAAAGGCCACACCCCGTCTCACCGCCAACCCAACATCAAAGgtagttgctattttgacagtaaatgaaatatagattgggcagatgataaatccgatcaaattgggttaaggttctgttgaatgggtattgttttctttta

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