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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCTgtaagtagttgattttatttatttatttttaagttattattattaattttcgtggagaattatttcataaggttatgttcgtctgcaggaaagagaaaatttttcccgagaaaaaaaaaaaaaaaatagaaatctggaaatgttcttatatgaatgttgttatgtttgcag

Basic information

species Vitis vinifera
transcript Vv00s0220g00030.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27585892|gb|CB008587.1|CB008587
EST:     TTCAACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: TTCAACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|34319677|gb|CF372431.1|CF372431
EST:     GTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: GTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|27580636|gb|CB003331.1|CB003331
EST:     CGACTCACTACTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: CGACTCACTACTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|32246334|gb|CD712153.1|CD712153
EST:     TTCAACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: TTCAACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|110730178|gb|EE106958.1|EE106958
EST:     CGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: CGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|110419842|gb|EC986096.1|EC986096
EST:     CTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: CTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|77578909|gb|DV218261.1|DV218261
EST:     ATTCAACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: ATTCAACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|110426527|gb|EC992940.1|EC992940
EST:     CTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: CTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|110380052|gb|EC945289.1|EC945289
EST:     TCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: TCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|27579125|gb|CB001820.1|CB001820
EST:     CTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: CTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|30125982|gb|CB911321.1|CB911321
EST:     CTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: CTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|34549721|gb|CF517953.1|CF517953
EST:     ACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: ACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|34544804|gb|CF513036.1|CF513036
EST:     CTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: CTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
EST: gi|34544882|gb|CF513114.1|CF513114
EST:     ATTCAACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCT                         ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT
genomic: ATTCAACTCGACTCACTACTTGTCTCTCTCGTCTTCCATGGCTgtaagtagtt ... atgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCT