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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCGCTCGACTCTGTGGTTAAGATCTTCACTGTCTCCAGCAGCCCCAACTATTTGCTTCCTTGGCAGAACAAGTCCCAGCGCGAAACTATGGGTTCCGgtatcagatttatccatgacttttatcttgtatcttgtatcttgttacttcctattggtgctgttagccctgagtgtactttgttagctcattacctgac...

Basic information

species Vitis vinifera
transcript Vv00s0215g00020.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0215g00020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os05g34460.1 (Oryza sativa), 5'ss of exon 1
CTGGCGCTCGACTCTGTGGTTAAGATCTTCACTGTCTCCAGCAGCCCCAACTATTTGCTTCCTTGGCAGAACAAGTCCCAGCGCGAAACTATGGGTTCCGgtatcagatttatccatgacttttatcttgtatcttgtatctt--gttacttcctattggtgctgttagccctgagtgtactttgtta-gctcattacctgac
|||||||| ||||| ||||| ||| | ||||| || ||||| ||||||||||| || || || |||||||||||| | |||||||| |  ||||| || ||||  || ||     ||  |    |    | | |  |  || |  ||  | |  |       |||||    | |    | | | | || |      |   || 
CTGGCGCTGGACTCGGTGGTGAAGGTTTTCACGGTGTCCAGTAGCCCCAACTACTTCCTGCCGTGGCAGAACAAGGCGCAGCGCGAGAGCATGGGCTCAGgta--agcttagcaaatctcaagcagtcagcagcgagagtcctgagtagcgtgtttcgatctctgttgctgcggtagatgcgtaggtatggcgggcaagcga-

upper sequence: Vv00s0215g00020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G00510.1 (Glycine max), 5'ss of exon 1
CTGGCGCTCGACTCTGTGGTTAAGATCTTCACTGTCTCCAGCAGCCCCAACTATTTGCTTCCTTGGCAGAACAAGTCCCAGCGCGAAACTATGGGTTCCGgt-atcagatttatccatgacttttatcttgtatcttgtatcttg----ttacttcctattggtgctgttagccctgagtgtactttgttagctcattacctgac
|| ||  || | ||||| || || || |||||||| ||| |||| |||||||| || |||||||||||||||||||||||||| ||||| |||||||| ||| |    ||||  |    ||| || |||  |||     ||  ||     ||   | ||||     | ||    | |       || |  |    || |      
CTTGCATTCAATTCTGTAGTCAAAATTTTCACTGTTTCCTGCAGTCCCAACTACTTACTTCCTTGGCAGAACAAGTCCCAGCGGGAAACAATGGGTTCTGgtcagtttattttacttccactgttttctcttattcctcattgtggtttctaacacatattaactttatttcttccgcaaacgtttggaaataaaatcaa-----

upper sequence: Vv00s0215g00020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S55_7V6.1 (Physcomitrella patens), 5'ss of exon 1
CTGGCGCTCGACTCTGTGGTTAAGATCTTCACTGTCTCCAGCAGCCCCAACTATTTGCTTCCTTGGCAGAACAAGTCCCAGCGCGAAACTATGGGTTCCGgtatcagatttatccatgacttttatcttgtatcttgtatcttgttacttcctattggtgctgttagccctgagtgtactttgttagctcattacctgac
 | ||  | ||| | || || ||||||||| | || ||||||||||| ||||| || || ||||||||||||||  | ||||| ||   ||  || || ||||   | |  |  | |  |||   | |     | ||    |||     ||   | | |       |       |  | ||| ||    | ||   ||  
ATAGCATTGGACGCGGTTGTGAAGATCTTCGCAGTGTCCAGCAGCCCAAACTACTTCCTCCCTTGGCAGAACAAAGCGCAGCGAGAGGTTACTGGCTCTGgtaagtgctgaagacttttcttcattatgaggacatgataattgcagtatcaagtggattacagaggtttatgtttcattttattctaccttttagtggg