Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGAGAGATGGCGATGGCAATGGCGCTTCGGAGGCTTTCATCGTCCGTCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagacggaatagtggaagaacttttggtggttctaaacttgtttatttattctccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag

Basic information

species Vitis vinifera
transcript Vv00s0211g00160.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 1
GAAGAGAGAGATGGCGATGGCAATGGCGCTTCGGAGGCTTTCATCGTCCGTCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagacggaatagtggaagaacttttggtggttctaaacttgtttatttattctccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag
   | |||| ||||||||||||||||||||||| ||||||||||| ||  | ||||||||  | ||     ||||||||| ||||||| |||| |||| ||||  | |  ||||  |   ||  ||     | |    | ||   |  | || |  |||  |  ||  ||| |||| |     |     ||||   ||                                                                                               
TGTGCGAGAAATGGCGATGGCAATGGCGCTTCGCAGGCTTTCATCTTCAATTGACAAGCCTCTGCGCCCTCTCTTCAATGCCGGTTCCCTCTACTACAAGgtttctcccctctctctcttcttcttcttctcactcttattatttgttacga-gatataa-gataggtcttgtggttgagaagagaagctttaaggatgaag-------------------------------------------------------------------------------------------

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 1
GAAGAGAGAGATGGCGATGGCAATGGCGCTTCGGAGGCTTTCATCGTCCGTCGACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagacggaatagtggaagaacttttggtggttctaaacttgtttatttattctccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag
   | |||| ||||||||||||||||||||||| ||||||||||| ||  | || |||||  ||||     |||||||||  |||||| |||| |||| ||||||| || ||||     |   |     | |||  |      ||                                                                                                                                                    
TGTGCGAGAAATGGCGATGGCAATGGCGCTTCGCAGGCTTTCATCTTCAATTGATAAGCCTCTTCGCCCTCTCTTCAATGCGGGTTCCCTCTACTACAAGgttcttcctctctctcggtctcttactcttactcttacttcctag----------------------------------------------------------------------------------------------------------------------------------------------------