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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGATGGCAATGGCGCTTTGGAGGCTTTCATCGTCCGTCAACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagatggaatagtggaagaacttttggtggttctaaacttgtttatttattttccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag

Basic information

species Vitis vinifera
transcript Vv00s0211g00100.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 1
----------ATGGCGATGGCAATGGCGCTTTGGAGGCTTTCATCGTCCGTCAACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttcttt--ctttctcatttccctgtttggatgctcagaaaatacaggaaaagatggaatagtggaagaacttttggtggttctaaacttgtttatttattttccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag
          ||||||||||||||||||||| | ||||||||||| ||  |  |||||||  | ||     ||||||||| ||||||| |||| |||| ||||  |   || ||||  |||    | |     |||  |  ||     |  ||||  ||    |  ||  ||| |||| |     |     ||||   ||                                                                                               
TGTGCGAGAAATGGCGATGGCAATGGCGCTTCGCAGGCTTTCATCTTCAATTGACAAGCCTCTGCGCCCTCTCTTCAATGCCGGTTCCCTCTACTACAAGgtttctcccctctctctcttcttcttcttctcactcttattatttgttacgagatataa----gataggtcttgtggttgagaagagaagctttaaggatgaag-------------------------------------------------------------------------------------------

upper sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 1
----------ATGGCGATGGCAATGGCGCTTTGGAGGCTTTCATCGTCCGTCAACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagatggaatagtggaagaacttttggtggttctaaacttgtttatttattttccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag
          ||||||||||||||||||||| | ||||||||||| ||  |  | |||||  ||||     |||||||||  |||||| |||| |||| ||||||| || ||||     |   |     | |||  |      ||                                                                                                                                                    
TGTGCGAGAAATGGCGATGGCAATGGCGCTTCGCAGGCTTTCATCTTCAATTGATAAGCCTCTTCGCCCTCTCTTCAATGCGGGTTCCCTCTACTACAAGgttcttcctctctctcggtctcttactcttactcttacttcctag----------------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G33480.1 (Glycine max), 5'ss of exon 1
------ATGGCGATGGCAATGGCGCTTTGGAGGCTTTCATCGTCCGTCAACAAGCCCGTTCGTAGCGTCTTCAATGGCGGTTCCATCTATTACATGgttctttctttctcatttccctgtttggatgctcagaaaatacaggaaaagatggaatagtggaagaacttttggtggttctaaacttgtttatttattttccttttcttacattctttgagcatccggatttctttggaagtgcttgttctgtttctgatgatccatttttcgttttggtttcattttccag
      ||||| ||||||||||| ||| | ||||||||||| ||| ||||||||||  | |||    |||||||||  || ||  | || |||| ||| ||| | | |||  |   |  ||   ||       ||||        |||   |||  | |    | |||||      || | | |    |    ||||| | || | ||||                                                                               
ATGGCAATGGCAATGGCAATGGCACTTGGCAGGCTTTCATCTTCCTTCAACAAGCCTTTACGTCCTCTCTTCAATGCTGGCTCAGTTTACTACAAGgtacttacgtcctccctcttcaattcaaatc------aaatc-------agaccaaatcctagtgatatttttgaa---ccttatcgtaaccaggggttttcttgttttaacatag-----------------------------------------------------------------------------