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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAATCGCCGCCAAGAATCTCATCAATCACGCCTCCAAGCTCGGAAGCCTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattttttctcattctcaaattctattgttattattattattattaatattaatctggaatttggttcattgctgatgttgatttgttgtaaacg...

Basic information

species Vitis vinifera
transcript Vv00s0207g00220.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110385431|gb|EC949956.1|EC949956
EST:     CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT                         TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: gi|110378448|gb|EC943581.1|EC943581
EST:     CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT                         TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: gi|110402069|gb|EC968702.1|EC968702
EST:     CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT                         TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: gi|110399404|gb|EC965908.1|EC965908
EST:     CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT                         TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: gi|110389361|gb|EC954190.1|EC954190
EST:     CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT                         TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
EST: gi|110402082|gb|EC968715.1|EC968715
EST:     CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCAT                         TTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC
genomic: CTGGGCTTTGGGACTTCTTTTCTCAAATGGGTTGCTTCTTTTTCTGCCATgtccgtattt ... tttactgcagTTATTTGTTGATACTGGATCGGACAAACTGGAGAACCAACATGCTGACTTC