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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGTCGCCTCCGACTTCTCCGGACAGAAAATCCGGCCTTCGTCCCTCTATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttccagatacgcctgttaacgtgcttcccattgagtttcattttttctcttctttgccgaccatgtttggtttgatttgattttttcataacct...

Basic information

species Vitis vinifera
transcript Vv00s0204g00220.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349818445|gb|FQ409220.1|FQ409220
EST:     ATTCGGCGTCGTTTTCGGGTTCTCAGGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|26263712|gb|CA814775.1|CA814775
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|349817360|gb|FQ405364.1|FQ405364
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|352786866|gb|FQ481241.1|FQ481241
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|349818802|gb|FQ409336.1|FQ409336
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|351033443|gb|FQ462094.1|FQ462094
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|110685889|gb|EE063005.1|EE063005
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|349815211|gb|FQ400366.1|FQ400366
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|349812676|gb|FQ409835.1|FQ409835
EST:     ATTCGGCGTCGTTTTCGGGTTCTCAGGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|349816081|gb|FQ399312.1|FQ399312
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|349810618|gb|FQ402861.1|FQ402861
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAGGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|351018478|gb|FQ439290.1|FQ439290
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|349817965|gb|FQ407954.1|FQ407954
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|349820386|gb|FQ406942.1|FQ406942
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|352786251|gb|FQ478862.1|FQ478862
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|349819431|gb|FQ412325.1|FQ412325
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|26265704|gb|CA816767.1|CA816767
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|351051760|gb|FQ449574.1|FQ449574
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|110713345|gb|EE089186.1|EE089186
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
EST: gi|351024251|gb|FQ423674.1|FQ423674
EST:     ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATG                         GTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA
genomic: ATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttcc ... ttgcaaacagGTCATTCCTTTTACAAGGGGAAGTGCATTGGACCAACCTCCTCCCGATTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCGTCGCCTCCGACTTCTCCGGACAGAAAATCCGGCCTTCGTCCCTCTATTCGGCGTCGTTTTCGGGTTCTCATGCCAAGAGAGGTGGTGTCACCATGgtactgttccagatacgcctgttaacgtgcttcccattgagtttcattttttctcttctttgccgaccatgtttggtttgatttgattttttcataacct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG